##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043249_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 808412 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20317362928804 33.0 31.0 34.0 30.0 34.0 2 32.48980346654923 34.0 31.0 34.0 31.0 34.0 3 32.5683822110508 34.0 31.0 34.0 31.0 34.0 4 36.1251614275889 37.0 35.0 37.0 35.0 37.0 5 36.08056040731706 37.0 35.0 37.0 35.0 37.0 6 36.322521189690406 37.0 37.0 37.0 35.0 37.0 7 36.25834599189522 37.0 37.0 37.0 35.0 37.0 8 36.15279214064116 37.0 37.0 37.0 35.0 37.0 9 37.677214093803656 39.0 38.0 39.0 35.0 39.0 10 37.51706431868899 39.0 37.0 39.0 35.0 39.0 11 37.31841437286928 39.0 37.0 39.0 35.0 39.0 12 37.32060508750489 39.0 37.0 39.0 34.0 39.0 13 37.33960035229561 39.0 37.0 39.0 34.0 39.0 14 38.74781423333647 40.0 38.0 41.0 35.0 41.0 15 38.84999604162234 40.0 38.0 41.0 35.0 41.0 16 38.88490274760889 40.0 38.0 41.0 35.0 41.0 17 38.85948996303865 40.0 38.0 41.0 35.0 41.0 18 38.64110503060321 40.0 38.0 41.0 35.0 41.0 19 38.40719212480765 40.0 37.0 41.0 35.0 41.0 20 38.13739281455496 40.0 35.0 41.0 34.0 41.0 21 38.07293929333063 40.0 35.0 41.0 34.0 41.0 22 38.02685264444367 40.0 35.0 41.0 34.0 41.0 23 37.99071760438984 40.0 35.0 41.0 34.0 41.0 24 37.92273370509097 40.0 35.0 41.0 34.0 41.0 25 37.91319648891902 40.0 35.0 41.0 34.0 41.0 26 37.892584474253226 40.0 35.0 41.0 34.0 41.0 27 37.8946787034334 40.0 35.0 41.0 34.0 41.0 28 37.83754570689203 40.0 35.0 41.0 34.0 41.0 29 37.85784476232416 40.0 35.0 41.0 34.0 41.0 30 37.782273147850354 40.0 35.0 41.0 34.0 41.0 31 37.65369390855158 40.0 35.0 41.0 34.0 41.0 32 37.487677075550586 40.0 35.0 41.0 33.0 41.0 33 37.30276270020732 40.0 35.0 41.0 33.0 41.0 34 37.04485089286156 40.0 35.0 41.0 33.0 41.0 35 36.90584998738267 40.0 35.0 41.0 32.0 41.0 36 36.83316675160685 40.0 35.0 41.0 32.0 41.0 37 36.697515623221825 40.0 35.0 41.0 32.0 41.0 38 36.649086109558 40.0 35.0 41.0 31.0 41.0 39 36.57926403863377 40.0 35.0 41.0 31.0 41.0 40 36.53058588937324 39.0 35.0 41.0 31.0 41.0 41 36.49356763630426 39.0 35.0 41.0 31.0 41.0 42 36.410894444911754 39.0 35.0 41.0 31.0 41.0 43 36.292311346194765 39.0 35.0 41.0 31.0 41.0 44 36.176330880788505 39.0 35.0 41.0 30.0 41.0 45 36.13436836662494 39.0 35.0 41.0 30.0 41.0 46 36.05026273731711 39.0 35.0 41.0 30.0 41.0 47 35.92457558769539 39.0 35.0 40.0 30.0 41.0 48 35.94103996477044 39.0 35.0 40.0 30.0 41.0 49 35.88488171872758 39.0 35.0 40.0 30.0 41.0 50 35.78961470141463 38.0 35.0 40.0 29.0 41.0 51 35.350427752185766 38.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 0.0 15 7.0 16 18.0 17 47.0 18 98.0 19 209.0 20 368.0 21 658.0 22 1099.0 23 1769.0 24 3349.0 25 6152.0 26 9549.0 27 11246.0 28 10913.0 29 10368.0 30 11188.0 31 13403.0 32 16864.0 33 22343.0 34 41656.0 35 76332.0 36 73514.0 37 61979.0 38 109276.0 39 325902.0 40 103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.032859482541078 19.522471215172462 24.8959688871516 27.548700415134856 2 32.00397816954721 20.45838013290253 26.803041023636464 20.734600673913796 3 22.194870932148458 21.923350964607156 36.89418266923302 18.98759543401137 4 23.111977555998674 25.002597685338664 33.15809265572505 18.72733210293761 5 20.25761616601436 30.448088350989348 29.826251960633932 19.46804352236236 6 75.25395466667986 1.380484208547127 19.552653844821698 3.8129072799513124 7 75.74392760127262 1.2601247878556974 16.031429518611798 6.964518092259888 8 63.76785599422077 3.4003701083111086 23.974161689831423 8.8576122076367 9 31.262153456405894 23.98331543816767 27.1537285443561 17.600802561070346 10 23.90785886404457 20.539279476306636 43.255295567111816 12.297566092536973 11 22.05719360919927 17.090171843070117 39.36915830047055 21.48347624726006 12 16.457697312756366 21.544954800275107 43.301435406698566 18.69591248026996 13 12.23546904301272 25.302197394397908 41.79180912702929 20.670524435560086 14 11.098425060488958 23.105668891604775 45.20999193480552 20.585914113100745 15 12.158775475871215 19.8954246102235 47.0894791269798 20.85632078692548 16 12.243509497632395 24.531921841833125 38.932499764971325 24.292068895563155 17 13.855187701320615 22.298654646393175 41.433452249595504 22.412705402690708 18 15.503975695561174 28.237458127786326 39.0941747524777 17.164391424174802 19 15.813223950164026 23.512268496756604 36.1704180541605 24.50408949891887 20 12.750305537275548 30.50449523262891 35.7921455891303 20.95305364096525 21 14.266611579244245 23.59094125272757 36.39567448281322 25.746772685214964 22 12.35471516998758 26.362053012572794 33.31803585300565 27.965195964433974 23 11.200105886602376 23.146737059816033 42.97326115891401 22.67989589466757 24 15.94409781151195 22.37052394076288 38.78220511323434 22.903173134490828 25 12.03903455168899 25.682696446861254 38.58193594355354 23.696333057896222 26 13.915924058524615 22.25016452007145 37.82279332815446 26.01111809324948 27 18.450987862624505 22.778360538933118 39.18274345259595 19.587908145846423 28 13.367070256255472 23.494826895197004 35.06640178522832 28.0717010633192 29 15.74296274671826 23.060023849225395 37.48484683552446 23.712166568531888 30 19.983498513134393 21.666180116079424 31.11569348302598 27.234627887760197 31 17.993671543717806 24.646096297432496 33.11986957145614 24.24036258739356 32 14.00560605235944 22.192149547507952 36.85051681568309 26.951727584449515 33 16.01299832263747 23.207473417020033 33.66587828978293 27.113649970559567 34 12.754882411443669 22.38153317862674 35.36983617264464 29.49374823728495 35 17.886053151116016 26.279792976848437 34.601045011701956 21.23310886033359 36 18.259130245468892 21.513782576211142 32.34105876706432 27.886028411255648 37 16.86268882698426 25.328050548482707 34.170447741992945 23.63881288254009 38 15.211921643914241 24.926893712611886 30.190793803159778 29.6703908403141 39 20.264543326917465 21.376476351167472 33.345868195919905 25.013112125995164 40 14.083041815311995 18.684779543104256 37.528388989772544 29.703789651811206 41 17.10860303904445 23.32770913840962 31.036649629149494 28.527038193396436 42 17.556394511709374 18.797840704987063 36.396664077227946 27.249100706075613 43 21.790992711637138 21.652078395669534 34.15275874182966 22.40417015086367 44 15.876929090612213 23.200175158211405 35.645933014354064 25.276962736822313 45 19.265547765248414 21.87622153060568 33.43047851837924 25.42775218576666 46 21.424224281678153 19.621925453852736 33.04750547987907 25.906344784590036 47 15.981578699969818 19.181061142090915 37.330470106826716 27.506890051112553 48 17.69803021231748 16.597724922440538 32.2219363393913 33.48230852585068 49 19.520615725644845 16.820878462961954 37.68796108914761 25.970544722245588 50 18.671296319203577 16.184692953592968 37.346674715367904 27.79733601183555 51 15.885959139646616 15.726139641667864 36.53434140017714 31.853559818508387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 160.0 1 1148.0 2 2136.0 3 25220.0 4 48304.0 5 26691.5 6 5079.0 7 4792.0 8 4505.0 9 4654.5 10 4804.0 11 4945.5 12 5087.0 13 4922.5 14 4758.0 15 4467.0 16 4176.0 17 3884.5 18 3593.0 19 3371.0 20 3149.0 21 3021.0 22 2893.0 23 2682.0 24 2471.0 25 2863.5 26 4147.5 27 5039.0 28 5254.0 29 5469.0 30 6269.5 31 7070.0 32 7640.0 33 8210.0 34 11047.0 35 13884.0 36 15297.5 37 16711.0 38 18697.5 39 20684.0 40 24983.0 41 29282.0 42 36203.5 43 43125.0 44 51259.0 45 59393.0 46 75179.0 47 90965.0 48 109477.5 49 127990.0 50 124256.0 51 120522.0 52 94122.0 53 67722.0 54 51002.5 55 34283.0 56 26765.0 57 19247.0 58 16251.0 59 13255.0 60 11076.0 61 8897.0 62 7511.0 63 6125.0 64 5357.0 65 4589.0 66 3694.0 67 2799.0 68 2395.0 69 1991.0 70 1949.5 71 1908.0 72 1919.5 73 1931.0 74 1586.0 75 1057.5 76 874.0 77 702.5 78 531.0 79 361.5 80 192.0 81 133.0 82 74.0 83 47.0 84 20.0 85 15.0 86 10.0 87 7.5 88 5.0 89 3.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 808412.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.031846169823485 #Duplication Level Percentage of deduplicated Percentage of total 1 70.96777928684746 21.312934305565886 2 12.43938779358241 7.47155561327294 3 5.073093609154303 4.570631006257099 4 2.6353739254761153 3.165805773194502 5 1.5254736190734317 2.2906394532068606 6 1.0468747941403225 1.886374966601268 7 0.7160819920581593 1.505368496132998 8 0.5360310681643023 1.2878402065085195 9 0.41628282344354717 1.1251567545116758 >10 4.008757517382051 26.36290627177786 >50 0.4409582160964495 8.81630592929841 >100 0.17937283336014884 9.477073718163398 >500 0.009134727624822394 1.7786736952919397 >1k 0.004152148920373815 2.2056351880485017 >5k 8.304297840747631E-4 1.3138044064495145 >10k+ 4.1521489203738153E-4 5.429294215718666 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43540 5.385867602163254 No Hit CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 5453 0.6745322929397386 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 5083 0.6287635512585167 TruSeq Adapter, Index 16 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 4238 0.524237641202753 TruSeq Adapter, Index 13 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG 2246 0.27782863193520135 No Hit TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 2033 0.2514806806430384 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC 1730 0.2139997921851729 No Hit ACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG 1632 0.20187726060474112 No Hit GCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG 1426 0.17639520442546622 No Hit AGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG 1170 0.1447281831541343 No Hit ACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 1123 0.13891431596760068 TruSeq Adapter, Index 16 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC 1059 0.1309975606497677 No Hit TCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTG 1031 0.12753398019821577 No Hit TGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCTT 965 0.1193698262767005 TruSeq Adapter, Index 13 (95% over 23bp) CGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT 917 0.11343225978832576 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6444733625923416 0.0 2 0.0 0.0 0.0 2.271242881105179 0.0 3 0.0 0.0 0.0 3.7430171744110674 0.0 4 0.0 0.0 0.0 4.704284449018569 0.0 5 1.2369930184114042E-4 0.0 0.0 9.527072829200952 0.0 6 1.2369930184114042E-4 0.0 0.0 10.67104397262782 0.0 7 1.2369930184114042E-4 0.0 0.0 14.870016773625329 0.0 8 1.2369930184114042E-4 0.0 0.0 19.905939050879997 0.0 9 1.2369930184114042E-4 0.0 0.0 23.942123570654566 0.0 10 1.2369930184114042E-4 0.0 0.0 26.24837335418079 0.0 11 1.2369930184114042E-4 0.0 0.0 28.40494698247923 0.0 12 1.2369930184114042E-4 0.0 0.0 30.030355808671814 0.0 13 2.4739860368228083E-4 0.0 0.0 30.682498527978307 0.0 14 2.4739860368228083E-4 0.0 0.0 31.170368574439767 0.0 15 2.4739860368228083E-4 0.0 0.0 32.70312662355334 0.0 16 2.4739860368228083E-4 0.0 0.0 34.512228912980014 0.0 17 2.4739860368228083E-4 0.0 0.0 36.7170452689965 0.0 18 2.4739860368228083E-4 0.0 0.0 37.756490502367605 0.0 19 2.4739860368228083E-4 0.0 0.0 38.94709628258858 0.0 20 2.4739860368228083E-4 0.0 0.0 40.164544811309085 0.0 21 2.4739860368228083E-4 0.0 0.0 41.31185583588566 0.0 22 6.184965092057021E-4 0.0 0.0 42.54266388920501 0.0 23 6.184965092057021E-4 0.0 0.0 43.4203104357679 0.0 24 0.0013606923202525445 0.0 0.0 44.16003226077792 0.0 25 0.0013606923202525445 0.0 0.0 44.8632627917448 0.0 26 0.0013606923202525445 0.0 0.0 45.54286675606003 0.0 27 0.0013606923202525445 0.0 0.0 46.19216439142417 0.0 28 0.001484391622093685 0.0 0.0 46.863233103912364 0.0 29 0.001484391622093685 0.0 0.0 47.67148434214237 0.0 30 0.001484391622093685 0.0 0.0 48.37867325076817 0.0 31 0.0028450839423462292 0.0 0.0 48.967234528928316 0.0 32 0.0028450839423462292 0.0 0.0 49.55963048544554 0.0 33 0.0028450839423462292 0.0 0.0 50.13248195227186 0.0 34 0.0028450839423462292 0.0 0.0 50.79402581851828 0.0 35 0.0028450839423462292 0.0 0.0 51.39075125059994 0.0 36 0.0028450839423462292 0.0 0.0 51.9525934795624 0.0 37 0.0028450839423462292 0.0 0.0 52.49278833070266 0.0 38 0.0028450839423462292 0.0 0.0 53.03397277625765 0.0 39 0.0028450839423462292 0.0 0.0 53.589382641524374 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGG 30 2.1646993E-6 45.000004 1 CAGCGAT 20 7.0320425E-4 45.000004 20 TTTACGG 40 6.8102963E-9 45.000004 1 TGCCAAC 20 7.0320425E-4 45.000004 29 TAGACGG 115 0.0 45.000004 1 GACGTTT 60 0.0 45.000004 27 CGTCTTT 20 7.0320425E-4 45.000004 1 ATACTAC 20 7.0320425E-4 45.000004 9 TGGCACG 20 7.0320425E-4 45.000004 31 TCCAGCG 20 7.0320425E-4 45.000004 17 CGTAGTA 20 7.0320425E-4 45.000004 28 CTTGCGT 20 7.0320425E-4 45.000004 12 AACGCCA 40 6.8102963E-9 45.000004 14 ACAGCCC 20 7.0320425E-4 45.000004 38 CTCGAGC 20 7.0320425E-4 45.000004 1 TAAGGTA 20 7.0320425E-4 45.000004 21 CCGGTTA 20 7.0320425E-4 45.000004 29 TGCTACG 20 7.0320425E-4 45.000004 10 TTACCGG 30 2.1646993E-6 45.000004 1 TCGACGT 60 0.0 45.000004 25 >>END_MODULE