##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043248_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1397265 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24440317334221 33.0 31.0 34.0 31.0 34.0 2 32.5846235324008 34.0 31.0 34.0 31.0 34.0 3 32.689152021985805 34.0 31.0 34.0 31.0 34.0 4 36.19382722676085 37.0 35.0 37.0 35.0 37.0 5 36.0887848761688 37.0 35.0 37.0 35.0 37.0 6 36.32811098825205 37.0 37.0 37.0 35.0 37.0 7 36.257587501297174 37.0 37.0 37.0 35.0 37.0 8 36.229426057333434 37.0 37.0 37.0 35.0 37.0 9 37.78029722350449 39.0 38.0 39.0 35.0 39.0 10 37.516333694753676 39.0 37.0 39.0 35.0 39.0 11 37.321403599174104 39.0 37.0 39.0 34.0 39.0 12 37.370704197127964 39.0 37.0 39.0 34.0 39.0 13 37.38007249877439 39.0 37.0 39.0 34.0 39.0 14 38.79379931509055 40.0 38.0 41.0 35.0 41.0 15 38.860046591018886 40.0 38.0 41.0 35.0 41.0 16 38.86905633505455 41.0 38.0 41.0 35.0 41.0 17 38.842893796094515 41.0 38.0 41.0 35.0 41.0 18 38.60372012467213 40.0 38.0 41.0 35.0 41.0 19 38.352914443573695 40.0 37.0 41.0 35.0 41.0 20 38.07216455003167 40.0 35.0 41.0 34.0 41.0 21 37.99692112806089 40.0 35.0 41.0 34.0 41.0 22 37.94878494773719 40.0 35.0 41.0 34.0 41.0 23 37.93419931079645 40.0 35.0 41.0 34.0 41.0 24 37.85825094022966 40.0 35.0 41.0 34.0 41.0 25 37.76810626473861 40.0 35.0 41.0 34.0 41.0 26 37.6899843623078 40.0 35.0 41.0 34.0 41.0 27 37.72213144965343 40.0 35.0 41.0 34.0 41.0 28 37.74735286434571 40.0 35.0 41.0 34.0 41.0 29 37.67763953151335 40.0 35.0 41.0 34.0 41.0 30 37.668823737802064 40.0 35.0 41.0 34.0 41.0 31 37.48389174566027 40.0 35.0 41.0 33.0 41.0 32 37.241130351078716 40.0 35.0 41.0 33.0 41.0 33 36.97999162649891 40.0 35.0 41.0 32.0 41.0 34 36.70860216208092 40.0 35.0 41.0 31.0 41.0 35 36.488281034735714 40.0 35.0 41.0 30.0 41.0 36 36.45568091951061 40.0 35.0 41.0 30.0 41.0 37 36.34161093278655 40.0 35.0 41.0 30.0 41.0 38 36.27907662469181 40.0 35.0 41.0 30.0 41.0 39 36.23083738589315 40.0 35.0 41.0 30.0 41.0 40 36.19760603750899 40.0 35.0 41.0 30.0 41.0 41 36.158669973126074 40.0 35.0 41.0 29.0 41.0 42 36.10210446837214 40.0 35.0 41.0 29.0 41.0 43 36.00504557116939 39.0 35.0 41.0 28.0 41.0 44 35.83211917567534 39.0 35.0 41.0 27.0 41.0 45 35.76678940644759 39.0 35.0 41.0 26.0 41.0 46 35.74817661646144 39.0 35.0 41.0 26.0 41.0 47 35.65655620086383 39.0 35.0 41.0 26.0 41.0 48 35.59193996843834 39.0 35.0 41.0 26.0 41.0 49 35.534781877453455 39.0 35.0 41.0 26.0 41.0 50 35.38880026337166 39.0 35.0 41.0 26.0 41.0 51 35.27751070841966 38.0 35.0 40.0 25.0 41.0 52 34.91630578308338 38.0 35.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 5.0 15 14.0 16 37.0 17 108.0 18 245.0 19 500.0 20 1009.0 21 1687.0 22 2645.0 23 4560.0 24 8627.0 25 15960.0 26 22877.0 27 24210.0 28 22237.0 29 20850.0 30 21298.0 31 24822.0 32 30355.0 33 38769.0 34 68573.0 35 109479.0 36 111920.0 37 108424.0 38 183099.0 39 574002.0 40 950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.23134122732624 18.850683299159428 26.14765273588045 27.77032273763388 2 32.63826117450877 20.236175671758758 26.113156774126594 21.01240637960587 3 21.423280480080727 22.524646362715732 36.19878834723549 19.853284809968045 4 23.05468182485069 24.36746071790247 33.315942215685645 19.26191524156119 5 21.18910872311265 30.169438152390565 29.910575302465887 18.730877822030894 6 76.33884767742697 1.611576902019302 18.760507133578812 3.2890682869749117 7 76.92341824922259 1.2752770591119078 16.017076216752013 5.784228474913491 8 66.35920888306799 3.567540874494101 22.551412938848394 7.521837303589512 9 34.08580333723381 25.448214905547623 25.321682000193235 15.144299757025331 10 22.762969086035934 20.06856251319542 44.81118470726741 12.357283693501232 11 21.718070659466886 17.294643464196128 41.24643499980319 19.7408508765338 12 18.85225780363782 19.714585279098813 43.30202216472895 18.131134752534415 13 14.794545057666225 23.075365088225926 42.2209101351569 19.909179718950952 14 14.199310796448778 23.173127502656975 43.03285346730935 19.594708233584896 15 15.283500266592235 20.909276336271216 44.535145444851196 19.272077952285358 16 15.65601371250264 24.379913616958845 38.858412684780625 21.105659985757892 17 16.293544889480522 22.280097189867348 40.74903472140217 20.677323199249965 18 17.026906134484154 27.418206281557183 39.56608087943232 15.988806704526343 19 17.146783179998067 23.529466493471173 37.28748662565798 22.036263700872777 20 15.799222051650904 28.261353429735948 36.389732799433176 19.54969171917997 21 15.64513531792466 23.295437873273862 37.707879321388575 23.351547487412912 22 13.956908675161833 25.427817915713913 35.144657598952236 25.470615810172013 23 13.727746705170457 23.04630832376106 41.940362064461645 21.285582906606834 24 17.47993401394868 22.64445183984427 38.47401888689691 21.401595259310152 25 14.76992553309501 25.452079598358225 38.19819432963683 21.57980053890994 26 15.845383660221934 22.92657441501791 37.40607544023503 23.821966484525127 27 18.758717923944275 23.558165416009132 38.28536462303142 19.39775203701517 28 15.211001492200834 22.89987940727063 36.757952142220695 25.131166958307837 29 16.72603264234057 25.427245368630864 36.19771482145477 21.649007167573796 30 18.95510157343095 21.73002257982559 34.536970438678416 24.777905408065042 31 18.485326691787172 24.102371418449614 35.8944795725936 21.517822317169614 32 16.526070573584825 24.037816734835555 35.18344766382898 24.25266502775064 33 15.35914804994042 21.976718804235418 38.54852157607898 24.11561156974518 34 18.855907791292275 20.481941507158627 38.19597570969 22.4661749918591 35 16.670137733357667 20.71031622491081 39.579893577810935 23.039652463920586 36 21.443033354446005 21.1935459630063 37.421963621789715 19.94145706075798 37 19.61317287701331 20.7169005163659 38.381266259442555 21.288660347178237 38 20.810798237986354 20.881293097587072 33.85005707578734 24.457851588639233 39 24.24114251770423 20.38274772501995 34.54570178169495 20.83040797558087 40 19.73576952117172 20.327425363120096 36.55920673601643 23.377598379691754 41 20.556086354413804 22.84462861375616 31.742439694689267 24.856845337140772 42 20.015315634471627 19.091153074041074 36.413636640150585 24.479894651336718 43 21.8946298662029 21.69889033218466 35.57571398410466 20.830765817507775 44 17.275534705299282 23.362640587147034 36.61460066630167 22.747224041252018 45 19.7231019169592 21.172147015777252 35.28307085627995 23.8216802109836 46 22.772988659989334 19.364759011354323 34.383241546879084 23.47901078177726 47 18.406172057555295 18.528768701713705 37.514286838931774 25.550772401799225 48 19.460803784536218 17.26666022551198 34.127456137525805 29.145079852425987 49 20.53118055630106 17.173335050974583 38.148454301796725 24.147030090927636 50 19.73541167924481 16.56600573262767 38.22395894837414 25.474623639753375 51 18.092344687657675 16.4949383259439 36.87153116982104 28.541185816577386 52 16.82114702651251 17.02382869391275 42.47683868128093 23.678185598293812 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 243.0 1 1355.0 2 2467.0 3 35916.0 4 69365.0 5 40231.5 6 11098.0 7 10777.5 8 10457.0 9 10688.5 10 10920.0 11 11108.0 12 11296.0 13 10881.5 14 10111.5 15 9756.0 16 9141.5 17 8527.0 18 7706.0 19 6885.0 20 6866.0 21 6847.0 22 6701.5 23 6556.0 24 7006.5 25 7457.0 26 8356.5 27 9256.0 28 9604.0 29 9952.0 30 12361.0 31 14770.0 32 16160.5 33 17551.0 34 20744.5 35 23938.0 36 25631.5 37 27325.0 38 32649.0 39 41866.5 40 45760.0 41 52887.5 42 60015.0 43 74108.0 44 88201.0 45 108548.5 46 128896.0 47 156777.0 48 184658.0 49 189709.5 50 194761.0 51 169605.0 52 144449.0 53 115674.5 54 86900.0 55 69502.5 56 52105.0 57 42428.0 58 32751.0 59 27328.0 60 21905.0 61 18504.0 62 15103.0 63 12184.5 64 7536.5 65 5807.0 66 5015.0 67 4223.0 68 3452.0 69 2681.0 70 2289.0 71 1897.0 72 1975.0 73 2053.0 74 1649.0 75 1245.0 76 928.5 77 612.0 78 567.0 79 522.0 80 358.0 81 194.0 82 146.0 83 98.0 84 62.5 85 27.0 86 24.0 87 21.0 88 13.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1397265.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.10927449291837 #Duplication Level Percentage of deduplicated Percentage of total 1 72.57879147167947 24.030311292001183 2 12.214814330936473 8.088472811260175 3 4.814023174643625 4.781664441136383 4 2.448042663671084 3.242116660874438 5 1.435202507605476 2.3759256888617237 6 0.8789889186755331 1.7461611230797032 7 0.6572835703356992 1.5233527504951057 8 0.4750301676967317 1.2582323371750506 9 0.37145329604594435 1.1068694226075997 >10 3.612606990133551 25.970326852121232 >50 0.35984920519942437 7.925145380902536 >100 0.14217452309740788 8.56331857163613 >500 0.006956551276781752 1.5083497876858547 >1k 0.003913060093189736 2.2823903305744633 >5k 6.521766821982893E-4 1.5338296418966197 >10k+ 2.1739222739942975E-4 4.063532907691955 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56456 4.040464765094668 No Hit CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 8542 0.6113371479282741 No Hit CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCTT 7512 0.5376217109853894 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 5256 0.3761634335648571 No Hit CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 4081 0.2920705807416632 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 2923 0.2091943904699538 No Hit TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 2898 0.20740518083541779 No Hit ACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 2126 0.15215438732094486 No Hit CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 1997 0.14292206560673887 No Hit GCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1928 0.1379838470154194 No Hit AGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1692 0.1210937080653992 No Hit ACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 1418 0.10148397047088419 No Hit TCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1400 0.10019573953401824 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5518638196762962 0.0 2 0.0 0.0 0.0 1.878813253033605 0.0 3 0.0 0.0 0.0 3.1455736742851212 0.0 4 0.0 0.0 0.0 3.940770004258319 0.0 5 0.0 0.0 0.0 7.730101305049508 0.0 6 0.0 0.0 0.0 8.707653880974618 0.0 7 0.0 0.0 0.0 12.04188181912522 0.0 8 0.0 0.0 0.0 16.03081734674525 0.0 9 0.0 0.0 0.0 19.250034889587873 0.0 10 0.0 0.0 0.0 21.121261893771045 0.0 11 7.15683853814416E-5 0.0 0.0 22.9231391325196 0.0 12 7.15683853814416E-5 0.0 0.0 24.251663070355303 0.0 13 7.15683853814416E-5 0.0 0.0 24.825713089499843 0.0 14 7.15683853814416E-5 0.0 0.0 25.23651562158932 0.0 15 7.15683853814416E-5 0.0 0.0 26.47128497457533 0.0 16 7.15683853814416E-5 0.0 0.0 28.046290431664715 0.0 17 7.15683853814416E-5 0.0 0.0 29.69658583017538 0.0 18 7.15683853814416E-5 0.0 0.0 30.73225193503022 0.0 19 7.15683853814416E-5 0.0 0.0 31.751672016403475 0.0 20 1.431367707628832E-4 0.0 0.0 32.915803373018 0.0 21 1.431367707628832E-4 0.0 0.0 34.05853578240348 0.0 22 2.862735415257664E-4 0.0 0.0 35.23655140578201 0.0 23 5.725470830515328E-4 0.0 0.0 36.15792279918269 0.0 24 0.0010019573953401824 0.0 0.0 36.920698650578096 0.0 25 0.0010019573953401824 0.0 0.0 37.6726676757809 0.0 26 0.0010019573953401824 0.0 0.0 38.403738732452325 0.0 27 0.0010019573953401824 0.0 0.0 39.14210976443266 0.0 28 0.0010019573953401824 0.0 0.0 39.89622584119691 0.0 29 0.0010019573953401824 0.0 0.0 40.7207652091765 0.0 30 0.0010019573953401824 0.0 0.0 41.49098417265157 0.0 31 0.0010019573953401824 0.0 0.0 42.164800521017845 0.0 32 0.0010019573953401824 0.0 0.0 42.85414720901189 0.0 33 0.0010019573953401824 0.0 0.0 43.55680561668689 0.0 34 0.0010019573953401824 0.0 0.0 44.26991300862757 0.0 35 0.0010019573953401824 0.0 0.0 44.918537285339575 0.0 36 0.0010019573953401824 0.0 0.0 45.54876848700855 0.0 37 0.0010019573953401824 0.0 0.0 46.171985986910144 0.0 38 0.0010019573953401824 0.0 0.0 46.802145620193734 0.0 39 0.0010019573953401824 0.0 0.0 47.43767288238094 0.0 40 0.0010019573953401824 0.0 0.0 48.06432566478084 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGACG 70 0.0 46.000004 36 CCGTAGG 35 1.01978E-7 46.000004 1 AGTACGG 55 1.8189894E-12 46.000004 1 GCGGTTT 20 6.311925E-4 46.0 18 TCTTCGA 20 6.311925E-4 46.0 31 GGCAACG 20 6.311925E-4 46.0 8 TCGGGTA 30 1.8616938E-6 46.0 4 ACCGAAC 25 3.4175362E-5 46.0 10 TCGTCCA 20 6.311925E-4 46.0 20 CGTACAA 20 6.311925E-4 46.0 16 CCAACGT 20 6.311925E-4 46.0 46 CATCCGG 45 3.110472E-10 46.0 1 CGTTTTT 16190 0.0 45.488575 1 TCTACGG 150 0.0 44.46667 1 TTACCGG 125 0.0 44.16 1 CGAGGGT 120 0.0 44.083332 3 CCCGCAC 110 0.0 43.909092 32 TACGGGA 630 0.0 43.079365 3 ATTACGG 155 0.0 43.03226 1 ACGGGAC 310 0.0 43.03226 4 >>END_MODULE