SRR1043247_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043247_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1372248
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52401	3.8186246217884814	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	8082	0.5889605960438637	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	7488	0.5456739598090141	No Hit
GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	5220	0.3803977123668608	No Hit
CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	4108	0.299362797395223	No Hit
TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	2868	0.20900012242684993	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCC	2718	0.1980691536806758	No Hit
ACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	2021	0.1472765855734532	No Hit
GCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	2018	0.1470579661985297	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	1941	0.14144673557549364	No Hit
AGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	1669	0.12162524558243115	No Hit
TGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCTT	1456	0.10610326996286386	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	1441	0.10501017308824645	No Hit
ACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	1439	0.10486442683829746	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	25	3.8912018E-5	45.000004	17
GTACGCC	25	3.8912018E-5	45.000004	21
AATCCGG	40	6.8175723E-9	45.0	1
GGCGTAC	20	7.033766E-4	45.0	8
GCACCGT	20	7.033766E-4	45.0	30
GCGATCG	20	7.033766E-4	45.0	8
TTACCGG	95	0.0	45.0	1
TGTCGTG	20	7.033766E-4	45.0	33
AGGTCGC	20	7.033766E-4	45.0	33
CGTAGTG	30	2.1658107E-6	44.999996	20
CGTAGCG	30	2.1658107E-6	44.999996	27
CGATAGT	55	1.8189894E-12	44.999996	9
ACGAAGG	120	0.0	44.999996	1
CGTTTTT	15200	0.0	44.422703	1
GGCGATT	345	0.0	43.695652	7
TACGCGG	150	0.0	43.5	1
GCGATTG	145	0.0	43.448273	8
TACGGGT	120	0.0	43.124996	3
ACGTAGG	100	0.0	42.750004	1
TACGGGA	645	0.0	42.55814	3