##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043247_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1372248 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.2152839719934 33.0 31.0 34.0 31.0 34.0 2 32.50917399770304 34.0 31.0 34.0 31.0 34.0 3 32.595655450035274 34.0 31.0 34.0 31.0 34.0 4 36.147157802379745 37.0 35.0 37.0 35.0 37.0 5 36.09917813689654 37.0 35.0 37.0 35.0 37.0 6 36.329706437903354 37.0 37.0 37.0 35.0 37.0 7 36.2694221452682 37.0 37.0 37.0 35.0 37.0 8 36.16460727215489 37.0 37.0 37.0 35.0 37.0 9 37.713297450606596 39.0 38.0 39.0 35.0 39.0 10 37.46265762456932 39.0 37.0 39.0 35.0 39.0 11 37.31164774880342 39.0 37.0 39.0 34.0 39.0 12 37.36890343436463 39.0 37.0 39.0 34.0 39.0 13 37.39312354618116 39.0 37.0 39.0 35.0 39.0 14 38.79745570771464 40.0 38.0 41.0 35.0 41.0 15 38.87162233065743 40.0 38.0 41.0 35.0 41.0 16 38.91143364756225 41.0 38.0 41.0 35.0 41.0 17 38.86352831266652 40.0 38.0 41.0 35.0 41.0 18 38.65874608671319 40.0 38.0 41.0 35.0 41.0 19 38.430960001399164 40.0 37.0 41.0 35.0 41.0 20 38.17660218852569 40.0 35.0 41.0 34.0 41.0 21 38.10507503016947 40.0 35.0 41.0 34.0 41.0 22 38.06565577067702 40.0 35.0 41.0 34.0 41.0 23 38.018382245774816 40.0 35.0 41.0 34.0 41.0 24 37.951014685392146 40.0 35.0 41.0 34.0 41.0 25 37.9268616168506 40.0 35.0 41.0 34.0 41.0 26 37.88701677830829 40.0 35.0 41.0 34.0 41.0 27 37.88176918457888 40.0 35.0 41.0 34.0 41.0 28 37.84206644863028 40.0 35.0 41.0 34.0 41.0 29 37.81641656610176 40.0 35.0 41.0 34.0 41.0 30 37.75525269484816 40.0 35.0 41.0 34.0 41.0 31 37.57263045746833 40.0 35.0 41.0 33.0 41.0 32 37.33445922311419 40.0 35.0 41.0 33.0 41.0 33 37.05712451393626 40.0 35.0 41.0 32.0 41.0 34 36.75057788388105 40.0 35.0 41.0 31.0 41.0 35 36.53860162303024 40.0 35.0 41.0 30.0 41.0 36 36.493421743008554 40.0 35.0 41.0 30.0 41.0 37 36.33701269741329 40.0 35.0 41.0 30.0 41.0 38 36.27087596411145 40.0 35.0 41.0 30.0 41.0 39 36.17095233514642 40.0 35.0 41.0 29.0 41.0 40 36.10490523578828 39.0 35.0 41.0 29.0 41.0 41 36.023444741766795 39.0 35.0 41.0 29.0 41.0 42 35.96260296972559 39.0 35.0 41.0 28.0 41.0 43 35.85194148579557 39.0 35.0 41.0 27.0 41.0 44 35.76106942768362 39.0 35.0 41.0 27.0 41.0 45 35.716666375174164 39.0 35.0 41.0 27.0 41.0 46 35.6208469606077 39.0 35.0 41.0 26.0 41.0 47 35.466645241967925 39.0 35.0 40.0 26.0 41.0 48 35.43096655998041 39.0 35.0 40.0 25.0 41.0 49 35.36240096542316 39.0 35.0 40.0 26.0 41.0 50 35.245867365082695 38.0 35.0 40.0 25.0 41.0 51 34.8044325806997 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 4.0 15 13.0 16 36.0 17 92.0 18 194.0 19 451.0 20 759.0 21 1327.0 22 2171.0 23 3842.0 24 6868.0 25 13190.0 26 21298.0 27 24611.0 28 23142.0 29 21506.0 30 21958.0 31 24678.0 32 29706.0 33 38158.0 34 67606.0 35 107313.0 36 106110.0 37 107759.0 38 194276.0 39 555093.0 40 84.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.62649317033073 18.91706163900403 26.250284205187402 27.206160985477844 2 32.383650768665724 20.25851012353452 26.142213360850224 21.21562574694953 3 21.657236884294967 22.56042639522885 35.74404918061458 20.0382875398616 4 23.247474217488385 24.597157365140994 32.852443581626645 19.302924835743976 5 21.431330196874036 30.32782704001026 29.374865184718796 18.865977578396908 6 76.76790201188123 1.577848901947753 18.32008499921297 3.334164086958043 7 77.31335735231532 1.2543651001859721 15.561545726428458 5.870731821070244 8 66.60436014481348 3.5159096606444318 22.20196349347931 7.677766701062781 9 34.235065381767726 25.509820382321564 24.926179524400837 15.328934711509874 10 23.102748191289038 20.08288589234599 44.37076971509523 12.443596201269742 11 21.816901901114083 17.258615060834483 41.03842745626155 19.88605558178988 12 19.10405407768858 19.557179168779985 43.077053127423035 18.2617136261084 13 14.90423013915852 23.022369134442172 41.99721916155097 20.076181564848337 14 14.355932746850423 23.028563350065003 42.802977304393956 19.812526598690617 15 15.349995044627502 20.86991564207053 44.30554826824306 19.47454104505891 16 15.715016527624744 24.397703622085803 38.633978697728104 21.253301152561342 17 16.443674904244716 22.21129125347605 40.47118305146009 20.87385079081915 18 17.148576642122997 27.443581626644747 39.430700573074255 15.977141158158 19 17.308606024566988 23.585678390495012 36.891436533337995 22.214279051600002 20 15.882624715066083 28.346844010703602 36.0439949630096 19.726536311220713 21 15.681349143886528 23.28004850435198 37.34601908692889 23.692583264832596 22 14.023631296966728 25.43213763109875 34.781103707201616 25.763127364732906 23 13.861561467023453 23.08270808192105 41.65697454104506 21.398755910010436 24 17.634276020078005 22.603567285213753 38.18150946476147 21.580647229946774 25 14.781657542951422 25.45137613609202 37.965732141711996 21.80123417924457 26 16.020646413767775 22.784802747025317 37.13796631512671 24.056584524080197 27 18.927336749625432 23.483218776780873 37.98562650483003 19.603817968763664 28 15.394374777736969 22.890978890113157 36.406757379132635 25.307888953017237 29 16.89024141408842 25.357296931749946 35.807740291842286 21.944721362319346 30 19.06659729145169 21.698774565530428 34.17203012866479 25.06259801435309 31 18.57951332412217 24.0022940459742 35.643484268149784 21.774708361753852 32 16.699823938530063 23.91236860975567 34.87161212841994 24.516195323294333 33 15.451580180841948 21.816901901114083 38.310859261591204 24.42065865645277 34 19.05348012895628 20.299246200395263 37.98322169170587 22.66405197894258 35 16.837408398481905 20.432531145973616 39.527330336790435 23.202730118754044 36 21.640476065550835 20.967419883286404 37.330642857559276 20.06146119360349 37 19.80108551806962 20.508100576572165 38.345911234703934 21.344902670654285 38 21.060697483253758 20.583815753420666 33.669861424465545 24.68562533886003 39 24.610784639511227 20.175580507313548 34.28170418175141 20.931930671423824 40 19.872136814919752 20.01351067737027 36.449606776617635 23.66474573109234 41 20.760751700858737 22.655817315820464 31.500355620849874 25.083075362470925 42 20.202179197929237 18.823346800286828 36.330532090409314 24.64394191137462 43 22.03326220916336 21.295567565046554 35.541024654435645 21.13014557135445 44 17.437372836396918 23.0254298056911 36.63113373092911 22.906063626982878 45 19.879278381167254 20.729926368994526 35.388574076989 24.00222117284922 46 23.054724801930846 19.06462971707738 34.253065043636425 23.62758043735535 47 18.62360156473174 18.12325468865686 37.49766806000082 25.755475686610584 48 19.711378701226018 16.933528050323265 34.0448665255843 29.31022672286642 49 20.701870215879346 16.788291912249097 38.11264436166057 24.397193510210982 50 19.890063603663478 16.252382951186668 38.24971870973759 25.60783473541226 51 18.381006931691648 16.246407354938757 36.62180597093237 28.750779742437228 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 141.0 1 1242.0 2 2343.0 3 33536.0 4 64729.0 5 38083.5 6 11438.0 7 10913.5 8 10389.0 9 10454.0 10 10519.0 11 10517.0 12 10515.0 13 10327.5 14 10140.0 15 9489.5 16 8839.0 17 8141.5 18 7444.0 19 6976.0 20 6508.0 21 6215.5 22 5923.0 23 6165.5 24 6408.0 25 6580.0 26 7939.0 27 9126.0 28 10064.0 29 11002.0 30 13200.0 31 15398.0 32 16735.5 33 18073.0 34 21857.0 35 25641.0 36 28401.5 37 31162.0 38 35636.5 39 40111.0 40 46190.0 41 52269.0 42 61348.0 43 70427.0 44 81897.0 45 93367.0 46 118688.0 47 144009.0 48 174023.5 49 204038.0 50 197570.5 51 191103.0 52 154762.0 53 118421.0 54 92742.0 55 67063.0 56 53802.5 57 40542.0 58 33394.0 59 26246.0 60 22061.5 61 17877.0 62 14586.0 63 11295.0 64 9371.0 65 7447.0 66 6175.5 67 4904.0 68 4043.0 69 3182.0 70 2646.5 71 2111.0 72 2141.0 73 2171.0 74 1721.0 75 1072.5 76 874.0 77 702.5 78 531.0 79 427.5 80 324.0 81 212.5 82 101.0 83 70.0 84 39.0 85 31.5 86 24.0 87 13.5 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 2.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1372248.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.56086702469209 #Duplication Level Percentage of deduplicated Percentage of total 1 71.98428819119216 23.438708356605208 2 12.304466461569573 8.012881925299009 3 4.91285517274904 4.799004719743565 4 2.571024733657817 3.348591778793063 5 1.4427100885846988 2.3487945674794055 6 0.9248961942847205 1.806925319624914 7 0.6763104755722469 1.5414878823759939 8 0.4834409736332056 1.2593005805406783 9 0.40377804718487714 1.1832626971688969 >10 3.775545043150604 26.45682345825876 >50 0.35932612915994366 7.751129215256787 >100 0.149171974241186 8.833580737511749 >500 0.007221638530365939 1.5357030080124217 >1k 0.004062171673330841 2.305575270558292 >5k 6.770286122218069E-4 1.527693455982499 >10k+ 2.256762040739356E-4 3.8505370267887895 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52401 3.8186246217884814 No Hit CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 8082 0.5889605960438637 No Hit CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 7488 0.5456739598090141 No Hit GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 5220 0.3803977123668608 No Hit CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 4108 0.299362797395223 No Hit TCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 2868 0.20900012242684993 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCC 2718 0.1980691536806758 No Hit ACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 2021 0.1472765855734532 No Hit GCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 2018 0.1470579661985297 No Hit CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 1941 0.14144673557549364 No Hit AGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 1669 0.12162524558243115 No Hit TGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCTT 1456 0.10610326996286386 Illumina Single End Adapter 1 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 1441 0.10501017308824645 No Hit ACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1439 0.10486442683829746 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5589368685543721 0.0 2 0.0 0.0 0.0 1.8715275955949653 0.0 3 0.0 0.0 0.0 3.1655356757670625 0.0 4 0.0 0.0 0.0 3.996507919851222 0.0 5 0.0 0.0 0.0 7.848727052252945 0.0 6 0.0 0.0 0.0 8.848619200027983 0.0 7 0.0 0.0 0.0 12.258279844459603 0.0 8 0.0 0.0 0.0 16.353749468026187 0.0 9 0.0 0.0 0.0 19.664594154992393 0.0 10 0.0 0.0 0.0 21.636468043677237 0.0 11 0.0 0.0 0.0 23.48059534428179 0.0 12 0.0 0.0 0.0 24.819128903813304 0.0 13 0.0 0.0 0.0 25.436582891722196 0.0 14 0.0 0.0 0.0 25.867408806571408 0.0 15 0.0 0.0 0.0 27.15099602987215 0.0 16 0.0 0.0 0.0 28.752820189936514 0.0 17 0.0 0.0 0.0 30.472553066209606 0.0 18 0.0 0.0 0.0 31.529869236464545 0.0 19 0.0 0.0 0.0 32.57632731109828 0.0 20 1.4574624994898882E-4 0.0 0.0 33.776547679428205 0.0 21 1.4574624994898882E-4 0.0 0.0 34.95308428214142 0.0 22 2.186193749234832E-4 0.0 0.0 36.157239799219965 0.0 23 3.6436562487247203E-4 0.0 0.0 37.0965743801412 0.0 24 0.0010202237496429217 0.0 0.0 37.86764491549632 0.0 25 0.0010202237496429217 0.0 0.0 38.622391870857165 0.0 26 0.0010202237496429217 0.0 0.0 39.363292932472845 0.0 27 0.0010202237496429217 0.0 0.0 40.09646944284123 0.0 28 0.0010202237496429217 0.0 0.0 40.87118363444509 0.0 29 0.0010202237496429217 0.0 0.0 41.72110289102261 0.0 30 0.0010202237496429217 0.0 0.0 42.50157405949945 0.0 31 0.0010202237496429217 0.0 0.0 43.19219266488273 0.0 32 0.0010202237496429217 0.0 0.0 43.8957098133865 0.0 33 0.0010202237496429217 0.0 0.0 44.59602054439139 0.0 34 0.0010202237496429217 0.0 0.0 45.30901119914185 0.0 35 0.0010202237496429217 0.0 0.0 45.97142790516 0.0 36 0.0010202237496429217 0.0 0.0 46.6062985699378 0.0 37 0.0010202237496429217 0.0 0.0 47.248893785962885 0.0 38 0.0010202237496429217 0.0 0.0 47.882744226991036 0.0 39 0.0010202237496429217 0.0 0.0 48.52176865989238 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 25 3.8912018E-5 45.000004 17 GTACGCC 25 3.8912018E-5 45.000004 21 AATCCGG 40 6.8175723E-9 45.0 1 GGCGTAC 20 7.033766E-4 45.0 8 GCACCGT 20 7.033766E-4 45.0 30 GCGATCG 20 7.033766E-4 45.0 8 TTACCGG 95 0.0 45.0 1 TGTCGTG 20 7.033766E-4 45.0 33 AGGTCGC 20 7.033766E-4 45.0 33 CGTAGTG 30 2.1658107E-6 44.999996 20 CGTAGCG 30 2.1658107E-6 44.999996 27 CGATAGT 55 1.8189894E-12 44.999996 9 ACGAAGG 120 0.0 44.999996 1 CGTTTTT 15200 0.0 44.422703 1 GGCGATT 345 0.0 43.695652 7 TACGCGG 150 0.0 43.5 1 GCGATTG 145 0.0 43.448273 8 TACGGGT 120 0.0 43.124996 3 ACGTAGG 100 0.0 42.750004 1 TACGGGA 645 0.0 42.55814 3 >>END_MODULE