SRR1043245_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043245_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2497200
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115371	4.620014416146083	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12275	0.4915505366009931	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	10300	0.4124619573922793	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	9002	0.3604837417908057	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	8523	0.3413022585295531	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	6118	0.24499439372096748	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTG	6040	0.2418708954028512	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	4223	0.16910940253083453	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4118	0.16490469325644722	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3936	0.15761653051417587	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCC	3574	0.1431202947300977	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	3551	0.14219926317475573	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	3386	0.1355918628864328	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	2916	0.11677078327727054	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2889	0.11568957232099952	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	2672	0.10699983982059907	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	2598	0.10403652090341182	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTATCG	20	7.034877E-4	45.000004	10
CGTTTTT	27750	0.0	44.286484	1
ATAGCGG	340	0.0	42.35294	1
ACTACGG	170	0.0	42.35294	1
CGACGGT	410	0.0	42.256096	27
CACGACG	400	0.0	42.1875	25
ACGTAGG	140	0.0	41.785717	1
GCGATAG	205	0.0	41.707317	8
TACGCGG	310	0.0	41.370968	1
ATACCGG	60	3.6379788E-12	41.250004	1
TTTACGG	150	0.0	40.5	1
CGCACTT	3545	0.0	40.239777	34
AGGGCGA	1215	0.0	40.185184	5
TAACGGG	555	0.0	40.135136	2
GTTTTTT	31175	0.0	40.0417	2
CACTTAC	3565	0.0	40.014027	36
TCGATCC	45	1.9299478E-8	40.0	16
TAACCCG	90	0.0	40.0	37
GGGCGAT	2565	0.0	39.912277	6
TACGGGA	440	0.0	39.886364	3