SRR1043243_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043243_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	469054
Sequences flagged as poor quality	0
Sequence length	51
%GC	32

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87563	18.66799984649955	No Hit
CGGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCT	1691	0.36051286205852634	No Hit
CCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC	1404	0.2993258771911123	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT	1187	0.25306254716940907	TruSeq Adapter, Index 16 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC	1090	0.2323826254546385	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCC	757	0.1613886674029003	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	718	0.1530740597031472	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTG	686	0.14625181748796515	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	658	0.14028235554968083	No Hit
CGGTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC	576	0.12280035987327685	No Hit
TCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC	507	0.10808990009679056	TruSeq Adapter, Index 13 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	503	0.10723711981989281	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTATA	30	2.1627438E-6	45.000004	34
CATGCGG	40	6.7993824E-9	45.000004	1
CGCGGAT	30	2.1627438E-6	45.000004	22
ACGTTCA	20	7.0290104E-4	45.000004	16
CCTAGGC	20	7.0290104E-4	45.000004	24
TAGGTTA	30	2.1627438E-6	45.000004	5
GTGATTA	30	2.1627438E-6	45.000004	43
CGTCTGC	20	7.0290104E-4	45.000004	37
CAACAGG	20	7.0290104E-4	45.000004	1
ACTTAGG	20	7.0290104E-4	45.000004	1
ATCCGTC	20	7.0290104E-4	45.000004	34
AACGGCC	30	2.1627438E-6	45.000004	5
ACGGCCA	30	2.1627438E-6	45.000004	6
AACGCGG	30	2.1627438E-6	45.000004	1
GGAACGA	20	7.0290104E-4	45.000004	7
CACAGTA	20	7.0290104E-4	45.000004	25
CATACGA	40	6.7993824E-9	45.000004	17
TATAGGT	30	2.1627438E-6	45.000004	22
TGGATGG	30	2.1627438E-6	45.000004	1
ACGTAGG	30	2.1627438E-6	45.000004	1