##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043243_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 469054 Sequences flagged as poor quality 0 Sequence length 51 %GC 32 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55020957075305 33.0 31.0 34.0 31.0 34.0 2 32.92610019315473 34.0 31.0 34.0 31.0 34.0 3 32.80148341129166 34.0 31.0 34.0 31.0 34.0 4 36.401783163558996 37.0 37.0 37.0 35.0 37.0 5 36.39045184562971 37.0 37.0 37.0 35.0 37.0 6 36.52635943835891 37.0 37.0 37.0 35.0 37.0 7 36.52187168215173 37.0 37.0 37.0 35.0 37.0 8 36.474292938552914 37.0 37.0 37.0 35.0 37.0 9 38.156235742579746 39.0 39.0 39.0 37.0 39.0 10 37.99614969704981 39.0 39.0 39.0 35.0 39.0 11 37.628281605103034 39.0 37.0 39.0 35.0 39.0 12 37.527902970660094 39.0 37.0 39.0 35.0 39.0 13 37.53290239503341 39.0 37.0 39.0 35.0 39.0 14 39.085559445181154 41.0 38.0 41.0 35.0 41.0 15 39.14717921603909 41.0 38.0 41.0 35.0 41.0 16 39.15298451777407 41.0 38.0 41.0 35.0 41.0 17 39.14877391515689 41.0 38.0 41.0 35.0 41.0 18 38.34458079453538 39.0 38.0 40.0 35.0 41.0 19 37.469532292657135 37.0 37.0 40.0 35.0 41.0 20 36.585921876798835 35.0 35.0 40.0 35.0 41.0 21 36.52357724270553 35.0 35.0 40.0 35.0 41.0 22 36.48766026939329 35.0 35.0 40.0 35.0 41.0 23 36.44575251463584 35.0 35.0 40.0 35.0 41.0 24 36.34353613869619 35.0 35.0 40.0 35.0 41.0 25 36.3128829516431 35.0 35.0 40.0 34.0 41.0 26 36.19982560643337 35.0 35.0 40.0 34.0 41.0 27 36.1822817841869 35.0 35.0 40.0 34.0 41.0 28 36.05965837622107 35.0 35.0 40.0 34.0 41.0 29 35.90129921075185 35.0 35.0 40.0 33.0 41.0 30 35.55931939606101 35.0 35.0 40.0 33.0 41.0 31 35.02602259014954 35.0 35.0 40.0 31.0 41.0 32 34.24031774593117 35.0 35.0 40.0 23.0 41.0 33 33.26968323476615 35.0 35.0 40.0 17.0 41.0 34 32.371377282786206 35.0 33.0 40.0 10.0 41.0 35 31.88075146998 35.0 33.0 40.0 10.0 41.0 36 31.641712894464177 35.0 33.0 40.0 8.0 41.0 37 31.586237405501286 35.0 32.0 40.0 8.0 41.0 38 31.53559078485633 35.0 31.0 40.0 8.0 41.0 39 31.429206445313334 35.0 31.0 40.0 8.0 41.0 40 31.30472824024526 35.0 31.0 40.0 8.0 41.0 41 31.065864484686198 35.0 31.0 40.0 7.0 41.0 42 30.797694934911544 35.0 30.0 39.0 7.0 41.0 43 30.543120834701334 35.0 27.0 39.0 7.0 41.0 44 30.373722428547673 35.0 26.0 39.0 7.0 41.0 45 30.261426189735083 35.0 24.0 39.0 7.0 41.0 46 30.13333646019435 35.0 24.0 39.0 7.0 41.0 47 30.026001270642613 35.0 23.0 39.0 7.0 41.0 48 29.959699736064504 35.0 23.0 38.0 7.0 41.0 49 29.86202654705002 35.0 24.0 38.0 7.0 41.0 50 29.72372903759482 35.0 24.0 38.0 7.0 41.0 51 29.356263884328882 35.0 23.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 0.0 15 4.0 16 16.0 17 50.0 18 142.0 19 282.0 20 570.0 21 980.0 22 1656.0 23 2952.0 24 5917.0 25 12554.0 26 20824.0 27 24089.0 28 20749.0 29 15091.0 30 12083.0 31 10589.0 32 10788.0 33 12969.0 34 26962.0 35 63067.0 36 72562.0 37 21606.0 38 36683.0 39 95823.0 40 44.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.237772196804634 11.737241341082264 15.290137169707538 54.73484929240556 2 57.956653178525286 13.122369705833444 16.006259407232427 12.91471770840884 3 15.205711922294663 13.96704857010067 58.17112741816507 12.656112089439594 4 14.95435493567905 15.57837690329898 56.786425443552346 12.68084271746963 5 12.991894323468086 19.75294955378272 55.36441433182533 11.890741790923858 6 50.07163354325941 1.274906513962145 46.87733182106964 1.7761281217088012 7 50.82165379679099 0.9018151428193769 45.82500095937781 2.451530101011824 8 46.20576735301266 1.897009725959058 48.04286926451965 3.854353656508632 9 27.406439343870854 13.029416655651588 51.18110068350339 8.383043316974165 10 22.4684151504944 11.554319971687695 57.45905588695545 8.51820899086246 11 20.583557543481135 11.244973926243034 57.60232297347427 10.569145556801562 12 12.430338511130914 19.503298127720903 58.22762411150955 9.838739249638634 13 8.839707155252913 21.62458906650407 59.17932690052744 10.356376877715572 14 8.04086523086894 13.910125486617744 67.1008028926307 10.948206389882614 15 8.538036132300332 11.16843689639146 67.49585335590359 12.797673615404623 16 9.228361766449066 12.381303645209293 58.279004123192635 20.111330465149003 17 11.080174137732543 13.075893180742515 61.2699177493423 14.57401493218265 18 14.253582743138315 14.896365876850002 58.01080472610829 12.839246653903388 19 15.044536449960985 13.884542078310814 57.01582333803784 14.055098133690363 20 11.232821807297242 17.606927986969517 58.34317583902919 12.817074366704048 21 11.959390603214128 13.573703667381581 57.40639670485701 17.06050902454728 22 9.802922478008929 16.301960968246725 56.97425029953907 16.920866254205272 23 9.627249740967992 13.51123751209882 64.10413299961199 12.757379747321204 24 11.147970169745914 13.61442392560345 61.7594136282816 13.478192276369032 25 9.149905980974472 18.27550772405736 57.70401702149432 14.870569273473844 26 9.660934561905453 18.13053507698474 57.94066354833345 14.267866812776353 27 11.236232928404831 15.240889108716694 61.13709722121546 12.385780741663007 28 9.109612112891053 14.57742605329024 59.74109590793384 16.571865925884865 29 10.882968698699937 17.753606194595932 57.25843932681525 14.104985779888882 30 16.630068179783137 15.371577686151275 54.09462449952458 13.903729634541012 31 15.170108345734178 15.09122617012114 53.99122489095072 15.747440593193959 32 14.664622836603037 16.297910261931463 53.340127149539285 15.697339751926217 33 12.025054684535256 17.050702051362958 52.27607055904011 18.64817270506168 34 12.141032802193351 15.653847957804432 51.89956806678975 20.305551173212464 35 17.329987592046972 16.65714395357464 48.994572053537546 17.01829640084084 36 13.71249365744669 20.23178567926081 49.196680979162316 16.859039684130188 37 14.070021788536074 20.196608492838777 48.59291254311871 17.140457175506445 38 13.35176760031894 20.378250691818 48.556882576419774 17.71309913144329 39 16.321148524476925 17.53017776204872 49.13165648304886 17.017017230425495 40 12.37725293889403 16.957322611042652 50.454531887586505 20.210892562476815 41 14.200923561039879 18.64199004805417 46.511702277349734 20.645384113556222 42 14.741159866454609 17.060722219616505 47.963773893837384 20.234344020091502 43 14.905746459895875 19.04215719298844 46.89673257236907 19.15536377474662 44 12.57275281737284 22.747913886247638 44.70721921143408 19.972114084945446 45 14.949451449086887 20.431762654193335 45.66553104759793 18.95325484912185 46 15.632528450881988 18.426236637999036 46.76178009355 19.17945481756898 47 13.722940215838689 17.126599496006854 49.94435608693242 19.206104201222036 48 14.365296959411921 15.936757814665262 48.67328708421631 21.0246581417065 49 14.437996478017457 18.770973064934953 47.850780507148436 18.94024994989916 50 13.17311013230886 18.825337807587186 47.458075189637015 20.54347687046694 51 13.447918576539161 16.675905119666393 47.80878107851122 22.067395225283228 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 76.0 1 431.5 2 787.0 3 48238.5 4 95690.0 5 53449.0 6 11208.0 7 11385.5 8 11563.0 9 12674.5 10 13786.0 11 13970.5 12 14155.0 13 13333.5 14 12512.0 15 11198.5 16 9885.0 17 8904.0 18 7923.0 19 7175.5 20 6428.0 21 5861.5 22 5295.0 23 4808.0 24 4321.0 25 4111.5 26 3744.5 27 3587.0 28 3412.5 29 3238.0 30 3297.0 31 3356.0 32 3506.0 33 3656.0 34 4463.0 35 5270.0 36 5633.0 37 5996.0 38 6786.5 39 7577.0 40 9758.0 41 11939.0 42 16073.0 43 20207.0 44 22134.0 45 24061.0 46 26155.0 47 28249.0 48 31012.5 49 33776.0 50 34279.0 51 34782.0 52 28507.5 53 22233.0 54 18944.0 55 15655.0 56 13097.5 57 10540.0 58 10104.5 59 9669.0 60 8182.0 61 6695.0 62 5994.5 63 5294.0 64 4709.0 65 4124.0 66 3464.0 67 2804.0 68 2491.5 69 2179.0 70 1970.5 71 1762.0 72 1791.0 73 1820.0 74 1504.0 75 1041.0 76 894.0 77 713.5 78 533.0 79 382.0 80 231.0 81 169.0 82 107.0 83 85.5 84 64.0 85 40.5 86 17.0 87 14.0 88 11.0 89 7.0 90 3.0 91 3.5 92 4.0 93 2.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 469054.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.711729844585705 #Duplication Level Percentage of deduplicated Percentage of total 1 84.95765388157996 33.73815399175121 2 6.865238178067737 5.452609676923234 3 2.205321296196814 2.627313706052383 4 1.1350146581952387 1.8029358190357643 5 0.6964514497207754 1.3828645910590747 6 0.5111945853856609 1.218025276371022 7 0.3713040066892943 1.0321587082700248 8 0.32018039381245683 1.0171933840490677 9 0.25498625484414306 0.9113350739807964 >10 2.421299470631467 20.820267751131507 >50 0.20141678239446603 5.228902899855814 >100 0.053459145997458796 3.894657745537289 >500 0.0037799396159819356 0.944607827832384 >1k 0.0021599654948468204 1.1519712261329322 >5k 0.0 0.0 >10k+ 5.399913737117051E-4 18.777002322017488 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 87563 18.66799984649955 No Hit CGGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCT 1691 0.36051286205852634 No Hit CCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 1404 0.2993258771911123 TruSeq Adapter, Index 13 (95% over 22bp) CTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGCT 1187 0.25306254716940907 TruSeq Adapter, Index 16 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 1090 0.2323826254546385 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCC 757 0.1613886674029003 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 718 0.1530740597031472 No Hit CGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTG 686 0.14625181748796515 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 658 0.14028235554968083 No Hit CGGTCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC 576 0.12280035987327685 No Hit TCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 507 0.10808990009679056 TruSeq Adapter, Index 13 (95% over 22bp) GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 503 0.10723711981989281 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.26159034993838665 0.0 2 0.0 0.0 0.0 0.9862403902322547 0.0 3 0.0 0.0 0.0 1.6096227726445143 0.0 4 0.0 0.0 0.0 2.3152984517774073 0.0 5 0.0 0.0 0.0 4.024056931611286 0.0 6 0.0 0.0 0.0 4.365595432508837 0.0 7 0.0 0.0 0.0 5.417499904062219 0.0 8 0.0 0.0 0.0 6.789196979452259 0.0 9 0.0 0.0 0.0 7.703803826425102 0.0 10 0.0 0.0 0.0 8.523325672523846 0.0 11 0.0 0.0 0.0 9.386978897952048 0.0 12 0.0 0.0 0.0 10.035731493602016 0.0 13 0.0 0.0 0.0 10.348062270015818 0.0 14 0.0 0.0 0.0 10.564455265278625 0.0 15 0.0 0.0 0.0 11.160548678830157 0.0 16 0.0 0.0 0.0 11.853219458740359 0.0 17 0.0 0.0 0.0 12.692994836415423 0.0 18 0.0 0.0 0.0 13.126420412148708 0.0 19 0.0 0.0 0.0 13.569439765997092 0.0 20 2.13195069224439E-4 0.0 0.0 14.04720991612906 0.0 21 4.26390138448878E-4 0.0 0.0 14.51069599662299 0.0 22 0.0012791704153466339 0.0 0.0 15.012983579715769 0.0 23 0.0014923654845710728 0.0 0.0 15.40696806764253 0.0 24 0.00213195069224439 0.0 0.0 15.714608552533397 0.0 25 0.00213195069224439 0.0 0.0 16.010523308616918 0.0 26 0.0029847309691421455 0.0 0.0 16.3121943315695 0.0 27 0.0031979260383665845 0.0 0.0 16.6157841101451 0.0 28 0.003411121107591024 0.0 0.0 16.91980027885915 0.0 29 0.003411121107591024 0.0 0.0 17.30269862318624 0.0 30 0.003411121107591024 0.0 0.0 17.644663514222245 0.0 31 0.003411121107591024 0.0 0.0 17.945481756897927 0.0 32 0.003411121107591024 0.0 0.0 18.235000660904713 0.0 33 0.003411121107591024 0.0 0.0 18.525585540257627 0.0 34 0.003411121107591024 0.0 0.0 18.88354006148546 0.0 35 0.003411121107591024 0.0 0.0 19.176896476738285 0.0 36 0.003411121107591024 0.0 0.0 19.454476456868505 0.0 37 0.004050706315264341 0.0 0.0 19.751883578436598 0.0 38 0.00426390138448878 0.0 0.0 20.046519164104772 0.0 39 0.004903486592162097 0.0 0.0 20.344352675811315 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTATA 30 2.1627438E-6 45.000004 34 CATGCGG 40 6.7993824E-9 45.000004 1 CGCGGAT 30 2.1627438E-6 45.000004 22 ACGTTCA 20 7.0290104E-4 45.000004 16 CCTAGGC 20 7.0290104E-4 45.000004 24 TAGGTTA 30 2.1627438E-6 45.000004 5 GTGATTA 30 2.1627438E-6 45.000004 43 CGTCTGC 20 7.0290104E-4 45.000004 37 CAACAGG 20 7.0290104E-4 45.000004 1 ACTTAGG 20 7.0290104E-4 45.000004 1 ATCCGTC 20 7.0290104E-4 45.000004 34 AACGGCC 30 2.1627438E-6 45.000004 5 ACGGCCA 30 2.1627438E-6 45.000004 6 AACGCGG 30 2.1627438E-6 45.000004 1 GGAACGA 20 7.0290104E-4 45.000004 7 CACAGTA 20 7.0290104E-4 45.000004 25 CATACGA 40 6.7993824E-9 45.000004 17 TATAGGT 30 2.1627438E-6 45.000004 22 TGGATGG 30 2.1627438E-6 45.000004 1 ACGTAGG 30 2.1627438E-6 45.000004 1 >>END_MODULE