##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043242_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 762232 Sequences flagged as poor quality 0 Sequence length 52 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26087726571438 33.0 31.0 34.0 31.0 34.0 2 32.59030715057882 34.0 31.0 34.0 31.0 34.0 3 32.664329233094385 34.0 31.0 34.0 31.0 34.0 4 36.17133366219209 37.0 35.0 37.0 35.0 37.0 5 36.07219061912908 37.0 35.0 37.0 35.0 37.0 6 36.31312776162638 37.0 37.0 37.0 35.0 37.0 7 36.24918135160949 37.0 37.0 37.0 35.0 37.0 8 36.22505877475624 37.0 37.0 37.0 35.0 37.0 9 37.75812482288857 39.0 38.0 39.0 35.0 39.0 10 37.58797846325003 39.0 37.0 39.0 35.0 39.0 11 37.23791181687465 39.0 37.0 39.0 35.0 39.0 12 37.21190923498357 39.0 37.0 39.0 34.0 39.0 13 37.226368087406456 39.0 37.0 39.0 34.0 39.0 14 38.63336228339928 40.0 38.0 41.0 35.0 41.0 15 38.74130842053338 40.0 38.0 41.0 35.0 41.0 16 38.753664238709476 40.0 38.0 41.0 35.0 41.0 17 38.73847463764313 40.0 38.0 41.0 35.0 41.0 18 38.466918208629394 40.0 38.0 41.0 35.0 41.0 19 38.179413879238865 40.0 37.0 41.0 35.0 41.0 20 37.874416188247146 40.0 35.0 41.0 34.0 41.0 21 37.79658686594108 40.0 35.0 41.0 34.0 41.0 22 37.74748239381186 39.0 35.0 41.0 34.0 41.0 23 37.730034949988976 39.0 35.0 41.0 34.0 41.0 24 37.634806725511396 39.0 35.0 41.0 34.0 41.0 25 37.52487169260802 39.0 35.0 41.0 34.0 41.0 26 37.49375911795884 39.0 35.0 41.0 34.0 41.0 27 37.51398917914756 39.0 35.0 41.0 34.0 41.0 28 37.4554308924317 39.0 35.0 41.0 34.0 41.0 29 37.431838337933854 39.0 35.0 41.0 33.0 41.0 30 37.37452901478815 39.0 35.0 41.0 33.0 41.0 31 37.23001527094113 39.0 35.0 41.0 33.0 41.0 32 37.05304815331815 39.0 35.0 41.0 33.0 41.0 33 36.85009419704237 39.0 35.0 41.0 33.0 41.0 34 36.63946410016898 39.0 35.0 41.0 32.0 41.0 35 36.52554471604446 39.0 35.0 41.0 31.0 41.0 36 36.36791160696481 39.0 35.0 41.0 31.0 41.0 37 36.401671669517945 39.0 35.0 41.0 31.0 41.0 38 36.29291081980289 39.0 35.0 41.0 31.0 41.0 39 36.192915017999766 39.0 35.0 41.0 31.0 41.0 40 36.16749231205198 39.0 35.0 41.0 31.0 41.0 41 36.190512862225674 39.0 35.0 41.0 31.0 41.0 42 36.13109263321403 39.0 35.0 41.0 31.0 41.0 43 36.03816685733477 39.0 35.0 41.0 31.0 41.0 44 35.93533071295879 38.0 35.0 41.0 30.0 41.0 45 35.88531182107285 38.0 35.0 41.0 30.0 41.0 46 35.846599198144396 38.0 35.0 41.0 30.0 41.0 47 35.763242687265816 38.0 35.0 40.0 30.0 41.0 48 35.700999170856115 38.0 35.0 40.0 30.0 41.0 49 35.65993949348755 38.0 35.0 40.0 29.0 41.0 50 35.525191805119704 38.0 35.0 40.0 28.0 41.0 51 35.455664417132844 38.0 35.0 40.0 28.0 41.0 52 35.15934649817903 37.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 0.0 14 1.0 15 4.0 16 11.0 17 50.0 18 150.0 19 240.0 20 444.0 21 777.0 22 1280.0 23 2218.0 24 4074.0 25 7271.0 26 10348.0 27 10902.0 28 10170.0 29 9879.0 30 11256.0 31 13309.0 32 16705.0 33 22469.0 34 41340.0 35 82688.0 36 79452.0 37 57647.0 38 97120.0 39 282130.0 40 294.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.75576464908322 19.30317803503395 25.19993912614532 28.74111818973751 2 32.841444599544495 20.09781798717451 26.457955058302456 20.602782354978537 3 21.66072796733803 21.43494369168442 37.83323187690887 19.07109646406868 4 22.52726204095341 24.40661111052803 34.93017873823193 18.13594811028663 5 19.231546300863776 30.153680244335057 31.259905120750638 19.354868334050526 6 73.07079734254138 1.7234910106109427 21.171900418770136 4.033811228077541 7 73.82266816402355 1.3892095844834644 17.840500005247744 6.9476222462452375 8 62.358573242792225 3.1776414529959385 25.461276881579366 9.002508422632479 9 33.873151481438725 19.456674608255753 29.397742419630767 17.272431490674755 10 26.414267572077794 19.01612632374395 41.92988486445072 12.639721239727535 11 23.901909130028653 16.358405314917242 39.832623138362074 19.907062416692032 12 17.08443098689113 22.84829290819593 41.934607835934465 18.132668268978474 13 12.394520303529633 26.164606051700794 40.91497077005426 20.52590287471531 14 10.814686342216017 22.544317215755832 45.77057903630391 20.870417405724243 15 11.190293768826288 18.183964987038067 48.818338773496784 21.807402470638863 16 11.808871839544915 24.270300905760976 39.263767461875126 24.657059792818984 17 14.45754048636111 22.00104430147252 41.5196423136263 22.021772898540075 18 16.487762256111 28.065733267561583 38.20083649072723 17.245667985600186 19 17.108308231614522 23.60606744403279 35.90284847657931 23.38277584777338 20 13.402874715309773 30.164175736521166 34.37509839523925 22.057851152929818 21 14.40637496195384 24.225039095708393 35.62458673999517 25.743999202342593 22 11.56485164621795 27.38890521521007 32.59821156813148 28.448031570440495 23 11.69945633350476 23.233083890469043 44.26145845359418 20.806001322432017 24 16.430168242739743 22.216857859549325 39.501359166238096 21.851614731472832 25 12.764224015785219 26.46792577587926 37.1930068535564 23.574843354779123 26 13.861265336537956 23.933526800239296 36.4166028190892 25.788605044133543 27 18.431133828020865 24.938076596101975 37.31121233430242 19.31957724157474 28 13.63797374027855 25.23418066940249 34.11979554781222 27.008050042506742 29 15.438606618457374 26.30065386916319 31.725642586509096 26.535096925870338 30 19.20150295448105 29.028563481984488 28.364067632951645 23.405865930582813 31 17.736594632605296 28.064290137385996 28.171344157684274 26.027771072324434 32 15.15444116751855 31.181976091268798 28.485159374048845 25.178423367163806 33 12.715551170772155 29.247525687717125 30.622828745053997 27.414094396456722 34 12.766060726917788 34.04226009928736 31.188666967537443 22.003012206257413 35 19.860882251073164 29.25356059572414 28.8686384197987 22.016918733404005 36 14.286332770075253 30.655102383526277 32.93852790226598 22.120036944132497 37 17.05373167224677 29.54664721502115 33.467500708445726 19.932120404286362 38 17.407692146223198 27.712166374542136 32.756037531880054 22.124103947354612 39 21.906191290840585 22.144963738074498 36.012001595314814 19.93684337577011 40 15.027970486675974 20.479197934487136 40.16887246927445 24.323959109562445 41 18.28996945811774 25.09039242645284 31.3080531911544 25.31158492427502 42 18.61349300475446 21.979790929795655 36.59883080217047 22.80788526327942 43 20.34236295511078 24.222939997271173 34.23275328246518 21.201943765152865 44 14.014105941498126 28.37666222357497 33.313610554266944 24.295621280659958 45 18.311222829794605 24.750469673275326 32.91976720998331 24.018540286946756 46 21.46105122849736 23.00533171003054 32.710775721827474 22.822841339644622 47 16.22458778954439 20.747357759842146 37.64864240808573 25.379412042527733 48 16.86205774619801 18.80477334984624 34.117171674765686 30.215997229190062 49 19.06191290840584 19.505478646921148 37.67422517028936 23.75838327438365 50 17.397196654037092 18.849510385289516 37.69692167214181 26.056371288531576 51 15.364351011240673 17.504775448944677 37.77130847301084 29.359565066803807 52 15.304526705779868 17.351016488418225 44.326530505148035 23.01792630065387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 215.0 1 1275.0 2 2335.0 3 29106.5 4 55878.0 5 30336.5 6 4795.0 7 4567.5 8 4340.0 9 4688.5 10 5037.0 11 5180.5 12 5324.0 13 5307.5 14 4965.0 15 4639.0 16 4208.5 17 3778.0 18 3471.0 19 3164.0 20 2947.5 21 2731.0 22 2600.0 23 2469.0 24 2462.5 25 2456.0 26 3200.5 27 3945.0 28 3914.0 29 3883.0 30 4572.5 31 5262.0 32 6336.0 33 7410.0 34 9408.5 35 11407.0 36 12243.0 37 13079.0 38 14566.5 39 19079.5 40 22105.0 41 31273.0 42 40441.0 43 57140.5 44 73840.0 45 92145.0 46 110450.0 47 112327.5 48 114205.0 49 99038.5 50 83872.0 51 66903.5 52 49935.0 53 40053.0 54 30171.0 55 24930.0 56 19689.0 57 17755.0 58 15821.0 59 13773.5 60 11726.0 61 9870.0 62 8014.0 63 6484.0 64 4226.5 65 3499.0 66 3114.0 67 2729.0 68 2231.5 69 1734.0 70 1614.0 71 1494.0 72 1686.5 73 1879.0 74 1498.5 75 1118.0 76 826.0 77 534.0 78 425.0 79 316.0 80 216.5 81 117.0 82 76.5 83 36.0 84 32.0 85 28.0 86 21.0 87 14.0 88 14.0 89 9.5 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 762232.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.185805892844837 #Duplication Level Percentage of deduplicated Percentage of total 1 74.34144890981645 23.18397995494377 2 11.421930522131804 7.124042163695246 3 4.365996464544336 4.084713548163794 4 2.1814107730418333 2.721162117625729 5 1.2464511293187577 1.943579148692601 6 0.8206453995449862 1.535549288223962 7 0.5818040629011899 1.2700820001313498 8 0.45936866139722615 1.1460625526071888 9 0.3537884175884934 0.9929859226246338 >10 3.5590875630380063 24.96495690354576 >50 0.4865966617463331 10.10664735563383 >100 0.16712253077328407 8.936613169480653 >500 0.009706611635822053 2.057496556434972 >1k 0.003798239335756456 2.4677323887389324 >5k 4.220265928618284E-4 0.6653006520040161 >10k+ 4.220265928618284E-4 6.799096277453506 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 51660 6.777464079177993 No Hit CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT 5055 0.6631839125095771 Illumina Single End Adapter 1 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCTT 4473 0.5868292068556555 Illumina Single End Adapter 1 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT 3579 0.46954208167592015 Illumina Single End Adapter 1 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 2253 0.29557929869121213 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT 1884 0.2471688409827979 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCG 1697 0.22263562799777495 No Hit ACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 1417 0.18590140534640373 Illumina Single End Adapter 1 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 1272 0.16687832575908648 Illumina Single End Adapter 1 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT 1137 0.14916718269503249 No Hit CGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 1038 0.13617901111472622 No Hit AGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 1000 0.13119365232632582 Illumina Single End Adapter 1 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 977 0.12817619832282034 Illumina Single End Adapter 1 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT 944 0.1238468077960516 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT 786 0.1031182107284921 No Hit TGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 784 0.10285582342383946 Illumina Single End Adapter 1 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 777 0.10193746785755518 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT 769 0.10088791863894458 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6097880960127625 0.0 2 0.0 0.0 0.0 2.17492836826583 0.0 3 0.0 0.0 0.0 3.6323586519589837 0.0 4 0.0 0.0 0.0 4.633235025556523 0.0 5 0.0 0.0 0.0 9.371424972974108 0.0 6 0.0 0.0 0.0 10.731247179336474 0.0 7 0.0 0.0 0.0 14.856631576737792 0.0 8 0.0 0.0 0.0 19.80210749483097 0.0 9 0.0 0.0 0.0 23.47959676319021 0.0 10 0.0 0.0 0.0 25.6184468770663 0.0 11 0.0 0.0 0.0 27.571395585595987 0.0 12 0.0 0.0 0.0 28.94630506197588 0.0 13 0.0 0.0 0.0 29.53418381805015 0.0 14 0.0 0.0 0.0 29.933537295731483 0.0 15 0.0 0.0 0.0 31.24403068881915 0.0 16 0.0 0.0 0.0 32.79696995140587 0.0 17 0.0 0.0 0.0 34.49330387598526 0.0 18 0.0 0.0 0.0 35.346980971672664 0.0 19 0.0 0.0 0.0 36.24736300758824 0.0 20 0.0 0.0 0.0 37.24653386370554 0.0 21 3.9358095697897754E-4 0.0 0.0 38.225763284669235 0.0 22 7.871619139579551E-4 0.0 0.0 39.219948781998134 0.0 23 7.871619139579551E-4 0.0 0.0 39.98454538775596 0.0 24 0.002492679394200191 0.0 0.0 40.58751141384775 0.0 25 0.002492679394200191 0.0 0.0 41.146265179105576 0.0 26 0.002492679394200191 0.0 0.0 41.721418150904185 0.0 27 0.002492679394200191 0.0 0.0 42.301687675143526 0.0 28 0.0026238730465265167 0.0 0.0 42.88182600573054 0.0 29 0.002755066698852843 0.0 0.0 43.59906170299856 0.0 30 0.002755066698852843 0.0 0.0 44.20163414813338 0.0 31 0.002755066698852843 0.0 0.0 44.70699209689438 0.0 32 0.002755066698852843 0.0 0.0 45.24882188100211 0.0 33 0.002755066698852843 0.0 0.0 45.765593677515504 0.0 34 0.002755066698852843 0.0 0.0 46.39283052928767 0.0 35 0.002755066698852843 0.0 0.0 46.87641033176251 0.0 36 0.002755066698852843 0.0 0.0 47.33729363238489 0.0 37 0.002755066698852843 0.0 0.0 47.81693762528994 0.0 38 0.002755066698852843 0.0 0.0 48.28700448157517 0.0 39 0.002755066698852843 0.0 0.0 48.75287314098595 0.0 40 0.002755066698852843 0.0 0.0 49.20680317803503 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCACGG 70 0.0 46.000004 1 TCGGGTA 35 1.0189615E-7 46.000004 4 ACGGGTC 55 1.8189894E-12 46.000004 4 TCGACGT 55 1.8189894E-12 46.000004 25 TACACGG 70 0.0 46.000004 1 CGGACAA 20 6.310109E-4 46.0 14 CTGTCGG 30 1.8605715E-6 46.0 1 ATCTCGG 30 1.8605715E-6 46.0 1 GGTACGA 20 6.310109E-4 46.0 7 ACCGGGT 25 3.4160657E-5 46.0 3 GTCGATT 20 6.310109E-4 46.0 19 CTCCGTT 25 3.4160657E-5 46.0 21 CTACTCG 25 3.4160657E-5 46.0 42 GGTAACG 20 6.310109E-4 46.0 27 CAACGGT 20 6.310109E-4 46.0 30 CAACGGC 25 3.4160657E-5 46.0 2 CCGATCT 25 3.4160657E-5 46.0 11 CTATCGG 25 3.4160657E-5 46.0 1 CGGCCAC 45 3.092282E-10 46.0 22 CCGGCCA 45 3.092282E-10 46.0 21 >>END_MODULE