##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043241_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 747653 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21367265295532 33.0 31.0 34.0 30.0 34.0 2 32.51284218748537 34.0 31.0 34.0 31.0 34.0 3 32.575317694170955 34.0 31.0 34.0 31.0 34.0 4 36.1334108202602 37.0 35.0 37.0 35.0 37.0 5 36.0881451689487 37.0 35.0 37.0 35.0 37.0 6 36.3214084608769 37.0 37.0 37.0 35.0 37.0 7 36.26740479875022 37.0 37.0 37.0 35.0 37.0 8 36.171102102178416 37.0 37.0 37.0 35.0 37.0 9 37.70795810355874 39.0 38.0 39.0 35.0 39.0 10 37.53670218670961 39.0 37.0 39.0 35.0 39.0 11 37.23676491634488 39.0 37.0 39.0 35.0 39.0 12 37.20762038004261 39.0 37.0 39.0 34.0 39.0 13 37.23730259893293 39.0 37.0 39.0 34.0 39.0 14 38.64643223527492 40.0 38.0 41.0 35.0 41.0 15 38.76458464020074 40.0 38.0 41.0 35.0 41.0 16 38.80516496289054 40.0 38.0 41.0 35.0 41.0 17 38.767781310313744 40.0 38.0 41.0 35.0 41.0 18 38.53186170589832 40.0 38.0 41.0 35.0 41.0 19 38.26699016789875 40.0 37.0 41.0 35.0 41.0 20 37.98584637525697 40.0 35.0 41.0 34.0 41.0 21 37.913180312257154 40.0 35.0 41.0 34.0 41.0 22 37.872182683678126 40.0 35.0 41.0 34.0 41.0 23 37.82918947693649 40.0 35.0 41.0 34.0 41.0 24 37.74381832213607 39.0 35.0 41.0 34.0 41.0 25 37.701988756816334 39.0 35.0 41.0 34.0 41.0 26 37.69368142707914 39.0 35.0 41.0 34.0 41.0 27 37.681860435255395 40.0 35.0 41.0 34.0 41.0 28 37.597749223235915 39.0 35.0 41.0 34.0 41.0 29 37.59244328585587 39.0 35.0 41.0 34.0 41.0 30 37.472105375087104 39.0 35.0 41.0 34.0 41.0 31 37.31293394128025 39.0 35.0 41.0 33.0 41.0 32 37.14896215222837 39.0 35.0 41.0 33.0 41.0 33 36.90519398705014 39.0 35.0 41.0 33.0 41.0 34 36.64695253011758 39.0 35.0 41.0 32.0 41.0 35 36.539726316887645 39.0 35.0 41.0 31.0 41.0 36 36.38676230818307 39.0 35.0 41.0 31.0 41.0 37 36.36920068534467 39.0 35.0 41.0 31.0 41.0 38 36.26418539081633 39.0 35.0 41.0 31.0 41.0 39 36.129241773924534 39.0 35.0 41.0 30.0 41.0 40 36.07500672103235 38.0 35.0 40.0 30.0 41.0 41 36.05884681797572 39.0 35.0 41.0 30.0 41.0 42 35.9742581117176 38.0 35.0 40.0 30.0 41.0 43 35.864197695989986 38.0 35.0 40.0 30.0 41.0 44 35.816551261079674 38.0 35.0 40.0 30.0 41.0 45 35.79348039799212 38.0 35.0 40.0 30.0 41.0 46 35.68914055049602 38.0 35.0 40.0 30.0 41.0 47 35.55210104152595 38.0 35.0 40.0 29.0 41.0 48 35.51560817652039 38.0 35.0 40.0 29.0 41.0 49 35.46287649484454 38.0 35.0 40.0 28.0 41.0 50 35.36642265863977 38.0 35.0 40.0 28.0 41.0 51 34.99331775569683 37.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 0.0 14 5.0 15 6.0 16 22.0 17 42.0 18 96.0 19 220.0 20 404.0 21 708.0 22 1117.0 23 1866.0 24 3384.0 25 6211.0 26 9488.0 27 11115.0 28 10871.0 29 10185.0 30 11156.0 31 13090.0 32 16306.0 33 21707.0 34 41621.0 35 80494.0 36 74006.0 37 57675.0 38 102717.0 39 273105.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.096661151630503 19.31029501653842 25.408444826677616 28.18459900515346 2 32.528726561653606 20.140760486482364 26.566334917401523 20.76417803446251 3 21.844759534168926 21.570166908980504 37.35021460490361 19.234858951946958 4 22.726318225165954 24.60834103521286 34.487522955167705 18.177817784453485 5 19.459963378733182 30.353519614045553 30.73872505025727 19.447791956963993 6 73.63121662054456 1.7070753411007513 20.644737598859365 4.016970439495327 7 74.3308727444416 1.3194623709127096 17.298532875545206 7.0511320091004785 8 62.671319448995725 3.1009037615043344 25.101350492808827 9.126426296691111 9 34.04600797428754 19.507311546934204 28.963703750269175 17.48297672850908 10 26.580245113709168 19.044262512154702 41.69086461232684 12.684627761809288 11 24.144890744770635 16.25901320532386 39.44677544261843 20.14932060728707 12 17.266432422527565 22.734477090307937 41.74650539755742 18.252585089607077 13 12.504330217360193 26.015812148148942 40.74403500019394 20.735822634296927 14 10.996010181193682 22.45560440471716 45.5097485063258 21.03863690776336 15 11.310995876429306 17.94829954537733 48.62589998301351 22.114804595179848 16 11.874091323113797 24.226746899965626 39.17231656931758 24.72684520760299 17 14.64864047893876 21.877930002287158 41.38296776713261 22.09046175164147 18 16.66334516145859 28.085756360236637 38.01616525313214 17.23473322517264 19 17.18203498146868 23.61509951809195 35.62000018725264 23.582865313186733 20 13.443669723788975 30.29560504672622 34.05590561396798 22.204819615516826 21 14.437178744685033 24.214842981971582 35.2798691371532 26.06810913619018 22 11.653266956729928 27.47838903876531 32.153151261347176 28.715192743157587 23 11.815374244469025 23.18267966556678 43.93762881978672 21.064317270177476 24 16.49776032464258 22.261262912072848 39.14676995879105 22.09420680449353 25 12.66416372301054 26.411048975928676 37.218736499418846 23.706050801641936 26 13.975199725006119 23.672077822198265 36.27351190993683 26.07921054285879 27 18.542291678091306 24.848425673407316 37.08418210051989 19.525100547981484 28 13.757986659586733 25.200728145275953 33.683941614626036 27.35734358051128 29 15.568585961669385 26.284385938396554 31.332315927308525 26.814712172625537 30 19.33169531855018 28.970792600310574 27.88312225056276 23.814389830576484 31 17.883028624241458 27.904522552574523 27.816513810551154 26.395935012632865 32 15.204647075581853 31.12887930630921 28.04335701187583 25.623116606233104 33 12.763541375477661 29.24177392453451 30.24237179547196 27.752312904515865 34 12.931935001932715 34.19380381005627 30.795302098700866 22.07895908931015 35 19.943342700423862 29.37726458664648 28.43217374905203 22.24721896387763 36 14.345959957359899 30.828873822481818 32.45556427915089 22.369601941007392 37 17.221090532640144 29.563982221699103 33.142513973728455 20.072413271932298 38 17.5576102817751 27.595154436616987 32.54129923908551 22.3059360425224 39 22.226621173191308 21.965804992422953 35.840155794198644 19.967418040187095 40 15.186590570759432 20.24481945501456 40.09868214265174 24.46990783157427 41 18.4731419522158 25.00692166018193 31.026960367978194 25.492976019624074 42 18.799630309782746 21.793666313115846 36.42117399381799 22.98552938328342 43 20.603274513711575 24.203206567752687 33.85501027883256 21.33850863970318 44 14.12179179378669 28.162396191816256 33.18411081076382 24.531701203633236 45 18.536941602588367 24.54360512162728 32.75088844691321 24.168564828871148 46 21.738426783547983 22.73915840637301 32.60964645363558 22.91276835644343 47 16.501371625607067 20.397831614398658 37.51887573513381 25.581921024860467 48 17.121579128285447 18.479562042819328 33.817961005974695 30.580897822920527 49 19.223222537728063 19.220279996201448 37.52369080308646 24.032806662984033 50 17.646154031348768 18.561150694239174 37.58668794213359 26.206007332278475 51 15.577279834361663 17.245968383728815 37.48182646227595 29.694925319633576 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 210.0 1 1233.5 2 2257.0 3 27172.0 4 52087.0 5 28552.0 6 5017.0 7 4662.5 8 4308.0 9 4567.5 10 4827.0 11 4960.5 12 5094.0 13 4886.5 14 4679.0 15 4418.5 16 4158.0 17 3754.0 18 3350.0 19 3091.0 20 2832.0 21 2649.5 22 2467.0 23 2325.0 24 2183.0 25 2230.5 26 3026.0 27 3774.0 28 3847.0 29 3920.0 30 4971.0 31 6022.0 32 7077.5 33 8133.0 34 10123.5 35 12114.0 36 12952.5 37 13791.0 38 15732.5 39 17674.0 40 23128.5 41 28583.0 42 39143.5 43 49704.0 44 66161.5 45 82619.0 46 100876.0 47 119133.0 48 115725.5 49 112318.0 50 90101.5 51 67885.0 52 54234.0 53 40583.0 54 32208.0 55 23833.0 56 20761.5 57 17690.0 58 15804.5 59 13919.0 60 11609.5 61 9300.0 62 7632.0 63 5964.0 64 4946.5 65 3929.0 66 3429.5 67 2930.0 68 2484.5 69 2039.0 70 1806.0 71 1573.0 72 1724.5 73 1876.0 74 1617.5 75 969.5 76 580.0 77 491.0 78 402.0 79 280.5 80 159.0 81 99.0 82 39.0 83 35.0 84 31.0 85 20.0 86 9.0 87 9.5 88 10.0 89 8.5 90 7.0 91 4.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 747653.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.89801352622211 #Duplication Level Percentage of deduplicated Percentage of total 1 73.82227143137024 22.809615412229174 2 11.587887729689324 7.160854236245679 3 4.429287495026721 4.105685547985862 4 2.2128460034917543 2.7349018298933903 5 1.297402692980845 2.004358297833957 6 0.8709487531452139 1.614635181319626 7 0.6137754331700604 1.327510914530595 8 0.4516041713788145 1.1162937436608749 9 0.3744035999663953 1.0411494746425138 >10 3.68205634911368 25.61201585579328 >50 0.47383062109456753 9.768641546538582 >100 0.1697238596523994 9.148917480741046 >500 0.008726162449994825 1.792306165275948 >1k 0.004799389347497155 3.289646863111221 >5k 0.0 0.0 >10k+ 4.363081224997413E-4 6.473467450198251 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48019 6.42263188939254 No Hit CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 4960 0.6634093623646263 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT 4378 0.5855657637968417 Illumina Single End Adapter 1 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 3622 0.48444933679126545 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 2252 0.3012092508155521 No Hit TCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 1758 0.23513581835423653 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCC 1515 0.20263410967387277 No Hit ACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 1439 0.19246896621828577 No Hit GCCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 1296 0.17334244629527334 No Hit CGTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC 1096 0.14659206878057066 No Hit CGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT 1061 0.1419107527154977 No Hit AGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 1025 0.13709568476285122 No Hit ACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 936 0.12519176676880853 Illumina Single End Adapter 1 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 903 0.12077795447888258 No Hit TGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCTT 848 0.11342160066233935 Illumina Single End Adapter 1 (95% over 23bp) CGTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT 819 0.10954279592270746 No Hit TGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG 771 0.10312270531917882 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6108448705482357 0.0 2 0.0 0.0 0.0 2.1821620457618707 0.0 3 0.0 0.0 0.0 3.6571778619225763 0.0 4 0.0 0.0 0.0 4.661119530049368 0.0 5 0.0 0.0 0.0 9.454653428796513 0.0 6 0.0 0.0 0.0 10.821062712247526 0.0 7 0.0 0.0 0.0 15.06514385684268 0.0 8 0.0 0.0 0.0 20.120831455233912 0.0 9 0.0 0.0 0.0 23.966599478635143 0.0 10 0.0 0.0 0.0 26.197580963361347 0.0 11 0.0 0.0 0.0 28.191286599532138 0.0 12 0.0 0.0 0.0 29.59434390017829 0.0 13 0.0 0.0 0.0 30.196762401809394 0.0 14 0.0 0.0 0.0 30.61874960710383 0.0 15 0.0 0.0 0.0 31.976197514087417 0.0 16 0.0 0.0 0.0 33.59834040657899 0.0 17 0.0 0.0 0.0 35.3515601488926 0.0 18 0.0 0.0 0.0 36.25130909659963 0.0 19 0.0 0.0 0.0 37.159618165111354 0.0 20 1.3375188757351337E-4 0.0 0.0 38.19044396264042 0.0 21 0.0012037669881616204 0.0 0.0 39.22086850450677 0.0 22 0.0018725264260291874 0.0 0.0 40.25156055014826 0.0 23 0.0018725264260291874 0.0 0.0 41.03681788209236 0.0 24 0.002808789639043781 0.0 0.0 41.662509212161254 0.0 25 0.002808789639043781 0.0 0.0 42.218515808804355 0.0 26 0.002808789639043781 0.0 0.0 42.811839182080455 0.0 27 0.002808789639043781 0.0 0.0 43.39713744210215 0.0 28 0.002808789639043781 0.0 0.0 43.99514213144333 0.0 29 0.002808789639043781 0.0 0.0 44.7264974526953 0.0 30 0.002808789639043781 0.0 0.0 45.36342394132037 0.0 31 0.002808789639043781 0.0 0.0 45.881980009442884 0.0 32 0.002808789639043781 0.0 0.0 46.418860086162965 0.0 33 0.002808789639043781 0.0 0.0 46.935008620309155 0.0 34 0.002808789639043781 0.0 0.0 47.54959854370945 0.0 35 0.002808789639043781 0.0 0.0 48.03953170789123 0.0 36 0.002808789639043781 0.0 0.0 48.51582217954051 0.0 37 0.002808789639043781 0.0 0.0 48.99893399745604 0.0 38 0.002808789639043781 0.0 0.0 49.473619446454435 0.0 39 0.002808789639043781 0.0 0.0 49.932120917056444 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 120 0.0 45.000004 24 TACCCGG 30 2.1644792E-6 45.000004 1 ACCGGCG 30 2.1644792E-6 45.000004 19 GTCGATT 30 2.1644792E-6 45.000004 19 CCCTCCG 60 0.0 45.000004 22 GGTCGAT 30 2.1644792E-6 45.000004 18 GACGTGT 60 0.0 45.000004 43 CGTGACA 30 2.1644792E-6 45.000004 26 ATTGTCG 35 1.2111741E-7 45.000004 4 TCGATGG 75 0.0 45.000004 1 ACGGGTC 60 0.0 45.000004 4 ATCCGTG 30 2.1644792E-6 45.000004 23 ACGGCCA 35 1.2111741E-7 45.000004 6 TATTCGG 30 2.1644792E-6 45.000004 1 TCCACGG 30 2.1644792E-6 45.000004 1 ATGACGG 60 0.0 45.000004 1 GCGATAG 55 1.8189894E-12 45.000004 8 TCTCCCG 65 0.0 45.000004 29 TTAGTCT 120 0.0 45.000004 44 CGTTTTG 60 0.0 45.000004 29 >>END_MODULE