SRR1043239_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043239_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	638112
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43681	6.845350032596159	No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	5463	0.8561193019407252	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	4555	0.7138245323704929	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	3952	0.6193270146933454	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	2043	0.3201632315330224	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCC	1529	0.2396131086705782	No Hit
TCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1482	0.2322476305100045	No Hit
ACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	1274	0.19965147184193371	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC	1181	0.1850772278220751	No Hit
GCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	1164	0.1824131187001655	No Hit
AGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	1150	0.18021914648212226	No Hit
ACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	929	0.145585727897297	No Hit
TGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCTT	846	0.13257860689032647	Illumina Single End Adapter 2 (95% over 21bp)
GGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	820	0.1285040870568176	No Hit
TGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	786	0.12317586881299834	No Hit
TCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	772	0.12098189659495512	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	688	0.10781806328669576	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCT	686	0.10750463868411815	No Hit
ATAGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC	667	0.1045271049596309	No Hit
CGGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCT	664	0.1040569680557645	No Hit
ATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG	643	0.10076600972869967	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCACC	30	2.1639771E-6	45.000004	30
GCCCATC	30	2.1639771E-6	45.000004	8
TCGCAGG	65	0.0	45.000004	1
AAATCCG	30	2.1639771E-6	45.000004	43
GTACAGG	140	0.0	45.000004	1
TTAGCAC	60	0.0	45.000004	29
GTTTAGA	35	1.2107921E-7	45.000004	30
TAGGTTG	30	2.1639771E-6	45.000004	35
AGGGTGC	35	1.2107921E-7	45.000004	5
TACGGGA	120	0.0	45.000004	3
CCTGTCA	30	2.1639771E-6	45.000004	28
TCGATGG	35	1.2107921E-7	45.000004	1
CCTCGCG	35	1.2107921E-7	45.000004	26
TAGCCGG	30	2.1639771E-6	45.000004	1
ATGTAGA	65	0.0	45.000004	39
GCATTAC	35	1.2107921E-7	45.000004	8
CTTATGG	60	0.0	45.000004	1
CTACGGC	30	2.1639771E-6	45.000004	2
CTTGCGG	140	0.0	45.000004	1
GTCACGG	30	2.1639771E-6	45.000004	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content