##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043239_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 638112 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.165130886114035 33.0 31.0 34.0 30.0 34.0 2 32.458372511408655 34.0 31.0 34.0 31.0 34.0 3 32.508393510857026 34.0 31.0 34.0 31.0 34.0 4 36.09017382528459 37.0 35.0 37.0 35.0 37.0 5 36.0343387994584 37.0 35.0 37.0 35.0 37.0 6 36.28754513314277 37.0 37.0 37.0 35.0 37.0 7 36.23185584975678 37.0 37.0 37.0 35.0 37.0 8 36.1382782332882 37.0 37.0 37.0 35.0 37.0 9 37.71049909733714 39.0 38.0 39.0 35.0 39.0 10 37.53175461361015 39.0 37.0 39.0 35.0 39.0 11 37.230153954164784 39.0 37.0 39.0 34.0 39.0 12 37.189675166741885 39.0 37.0 39.0 34.0 39.0 13 37.23220218394263 39.0 37.0 39.0 34.0 39.0 14 38.622603868913295 40.0 38.0 41.0 35.0 41.0 15 38.74040920716113 40.0 38.0 41.0 35.0 41.0 16 38.78135656436488 40.0 38.0 41.0 35.0 41.0 17 38.75488942380021 40.0 38.0 41.0 35.0 41.0 18 38.511874091068655 40.0 38.0 41.0 35.0 41.0 19 38.27259164535379 40.0 37.0 41.0 35.0 41.0 20 37.98321924677799 40.0 35.0 41.0 34.0 41.0 21 37.92664767313575 40.0 35.0 41.0 34.0 41.0 22 37.887413181385085 40.0 35.0 41.0 34.0 41.0 23 37.87013721729101 40.0 35.0 41.0 34.0 41.0 24 37.783633594102604 40.0 35.0 41.0 34.0 41.0 25 37.75505083747054 40.0 35.0 41.0 34.0 41.0 26 37.73808202948699 40.0 35.0 41.0 34.0 41.0 27 37.718883205456095 40.0 35.0 41.0 34.0 41.0 28 37.63286382327867 40.0 35.0 41.0 34.0 41.0 29 37.65101424201394 40.0 35.0 41.0 34.0 41.0 30 37.38185616318138 39.0 35.0 41.0 33.0 41.0 31 37.29187039265834 39.0 35.0 41.0 33.0 41.0 32 37.08215955819668 39.0 35.0 41.0 33.0 41.0 33 36.82669970161978 39.0 35.0 41.0 32.0 41.0 34 36.62708113936112 39.0 35.0 41.0 31.0 41.0 35 36.51140865553383 39.0 35.0 41.0 31.0 41.0 36 36.469729451883055 39.0 35.0 41.0 31.0 41.0 37 36.37048981996891 39.0 35.0 41.0 31.0 41.0 38 36.28043666315631 39.0 35.0 41.0 31.0 41.0 39 36.20200529060729 39.0 35.0 41.0 31.0 41.0 40 36.071568940875586 38.0 35.0 41.0 30.0 41.0 41 36.023102527456 38.0 35.0 41.0 30.0 41.0 42 35.89004281380071 38.0 35.0 40.0 30.0 41.0 43 35.76027875984153 38.0 35.0 40.0 29.0 41.0 44 35.63958051251191 38.0 35.0 40.0 29.0 41.0 45 35.571880798355146 38.0 35.0 40.0 29.0 41.0 46 35.45547646808084 38.0 35.0 40.0 28.0 41.0 47 35.24981821373051 37.0 35.0 40.0 28.0 41.0 48 35.21847418634973 37.0 35.0 40.0 28.0 41.0 49 35.0572470036608 37.0 35.0 40.0 28.0 41.0 50 34.70100703324808 36.0 35.0 39.0 27.0 40.0 51 34.234118775387394 36.0 34.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 2.0 15 4.0 16 13.0 17 33.0 18 78.0 19 216.0 20 373.0 21 631.0 22 1008.0 23 1577.0 24 2793.0 25 5092.0 26 7652.0 27 9161.0 28 9087.0 29 9114.0 30 10074.0 31 12024.0 32 14602.0 33 19376.0 34 36252.0 35 70810.0 36 66698.0 37 50204.0 38 91710.0 39 219506.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.825522792237102 20.202879745248485 24.05925605536332 27.912341407151096 2 33.51214206910386 20.180469886164186 26.8263251592197 19.481062885512262 3 22.137179680056164 21.857761646858233 37.26555839727195 18.73950027581365 4 22.806184494258062 24.390545860287848 34.425147936412415 18.37812170904167 5 18.952315580963845 30.536175467629505 30.925448824030894 19.58606012737576 6 72.03563010882102 1.6005027330625345 22.004601073165837 4.359266084950604 7 73.31816358256857 1.2499373150794846 17.69187854169801 7.740020560653929 8 60.48279925781054 2.768166089965398 26.778841331929193 9.97019332029487 9 33.19840404192367 19.545941778245826 29.00917080387142 18.24648337595908 10 26.1041948748809 18.31857103455193 42.79374153753573 12.783492553031442 11 23.100646908379723 15.789547916353241 39.6300335991174 21.47977157614964 12 15.776384083044984 22.747417381274758 43.04542149340554 18.43077704227471 13 11.637612206007724 26.09729953362419 42.71052730555137 19.55456095481671 14 9.584524346823128 23.243881951757686 46.332462012938166 20.839131688481018 15 9.792951707537236 18.4882904568477 50.60240208615415 21.11635574946091 16 10.24224587533223 25.195420239707133 39.05239205656687 25.50994182839376 17 13.1605423499323 22.291071159921767 41.68014392457751 22.868242565568426 18 14.93311518980994 28.83663056015245 39.352339401233635 16.87791484880397 19 15.710721628804974 23.681736121558597 35.296781756180735 25.310760493455692 20 11.757340404192368 31.260499724186353 34.95060428263377 22.031555588987516 21 13.765921969810943 24.37095682262675 35.78901509452886 26.074106113033444 22 10.820514267087908 27.350214382428163 31.94580261772228 29.88346873276165 23 10.699845795095532 23.07604307707738 44.44219823479264 21.781912893034452 24 16.288206459054212 21.13986259465423 39.42035253999298 23.151578406298583 25 12.11151020510506 27.059669775838724 37.25004387944436 23.578776139611854 26 15.203914046436989 23.77184569479966 35.83226768968457 25.19197256907878 27 20.906361265733914 24.602107467027732 36.598277418384235 17.893253848854123 28 13.752914848803972 25.015671230128877 33.23993280176521 27.99148111930194 29 21.978430118850607 24.088874680306905 29.937064339802415 23.99563086104007 30 23.45889122912592 26.928658291961288 27.12392181936713 22.488528659545658 31 24.564183090115844 26.586241913645253 26.63623313775638 22.213341858482526 32 22.087345168246326 26.99463417080387 25.99010831954265 24.92791234140715 33 21.896783009879144 29.781762449225212 27.552529963392008 20.768924577503636 34 21.39263953663307 27.32357329120907 28.45958076325159 22.82420640890627 35 22.86150393661301 28.97218670076726 26.613509854069505 21.552799508550223 36 24.467805024823228 29.43339100346021 26.424984955619074 19.67381901609749 37 23.271620029085803 27.69075021312873 31.523462965748962 17.51416679203651 38 19.241136352239106 30.86166691740635 27.180965097036257 22.71623163331829 39 25.233501328920315 26.647829848051753 30.07669500025074 18.041973822777194 40 17.885261521488392 22.828907777944938 37.027042274710396 22.258788425856277 41 20.90307030740685 27.50097161626799 27.883349631412667 23.71260844491249 42 19.69951983350885 22.587727546261473 34.860808133995285 22.85194448623439 43 23.891260468381724 23.920879093325308 32.1399691590191 20.04789127927386 44 17.981482874479717 25.756606990622338 32.1442003911539 24.117709743744044 45 22.179178576801565 22.654957123514368 32.205318188656534 22.96054611102753 46 25.779016849706633 21.58602251642345 30.706521739130434 21.928438894739482 47 17.807532220049143 20.87423524396971 36.595456596961036 24.72277593902011 48 19.518673837821574 18.01454917005165 31.248119452384532 31.21865753974224 49 21.536501429216187 17.760518529662505 37.48166466074921 23.221315380372097 50 19.459436587934405 17.190085752971264 37.70513640238704 25.645341256707287 51 17.20654054460659 16.03731006469084 36.156818865653676 30.599330525048895 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 180.0 1 1110.5 2 2041.0 3 24163.0 4 46285.0 5 25043.5 6 3802.0 7 3485.5 8 3169.0 9 3447.0 10 3725.0 11 3870.0 12 4015.0 13 3963.5 14 3912.0 15 3590.5 16 3269.0 17 3013.5 18 2758.0 19 2482.5 20 2207.0 21 2091.0 22 1975.0 23 1876.5 24 1778.0 25 1885.0 26 2576.0 27 3160.0 28 3008.0 29 2856.0 30 3643.0 31 4430.0 32 4833.0 33 5236.0 34 6466.0 35 7696.0 36 9070.5 37 10445.0 38 11076.0 39 11707.0 40 15543.5 41 19380.0 42 24741.0 43 30102.0 44 37507.0 45 44912.0 46 59763.5 47 74615.0 48 90812.0 49 107009.0 50 103883.5 51 100758.0 52 77773.5 53 54789.0 54 41321.5 55 27854.0 56 21839.0 57 15824.0 58 13206.5 59 10589.0 60 8696.0 61 6803.0 62 5769.0 63 4735.0 64 4212.5 65 3690.0 66 3084.5 67 2479.0 68 2244.0 69 2009.0 70 1911.5 71 1814.0 72 1668.5 73 1523.0 74 1362.0 75 889.0 76 577.0 77 482.0 78 387.0 79 322.5 80 258.0 81 182.0 82 106.0 83 76.5 84 47.0 85 25.5 86 4.0 87 4.5 88 5.0 89 3.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 638112.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.430675492458157 #Duplication Level Percentage of deduplicated Percentage of total 1 73.00206606544465 21.48500116651093 2 11.746234787800125 6.913992485959371 3 4.648774450079819 4.104497168337893 4 2.3054588287730953 2.7140484260337447 5 1.3905390297011524 2.046225147136612 6 0.9137069460703044 1.6134607575000057 7 0.6348349548665218 1.3078535083562142 8 0.4927735833370056 1.1602127537957756 9 0.3920946098839938 1.0385648303254016 >10 3.76384900100692 24.695375733018317 >50 0.49730504720356883 9.733984081556041 >100 0.1962338834911328 10.509772438841695 >500 0.010214914483100065 2.0007839644869656 >1k 0.004838643702521083 2.9003060552824103 >5k 5.376270780578982E-4 0.8643956344794222 >10k+ 5.376270780578982E-4 6.911525848379213 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43681 6.845350032596159 No Hit CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 5463 0.8561193019407252 No Hit CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT 4555 0.7138245323704929 No Hit GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 3952 0.6193270146933454 No Hit CGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 2043 0.3201632315330224 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCC 1529 0.2396131086705782 No Hit TCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 1482 0.2322476305100045 No Hit ACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 1274 0.19965147184193371 No Hit CGTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC 1181 0.1850772278220751 No Hit GCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 1164 0.1824131187001655 No Hit AGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 1150 0.18021914648212226 No Hit ACTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC 929 0.145585727897297 No Hit TGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCTT 846 0.13257860689032647 Illumina Single End Adapter 2 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 820 0.1285040870568176 No Hit TGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 786 0.12317586881299834 No Hit TCCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 772 0.12098189659495512 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 688 0.10781806328669576 No Hit CGTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCT 686 0.10750463868411815 No Hit ATAGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC 667 0.1045271049596309 No Hit CGGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCT 664 0.1040569680557645 No Hit ATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTG 643 0.10076600972869967 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7388985005767013 0.0 2 0.0 0.0 0.0 2.658310766761948 0.0 3 0.0 0.0 0.0 4.347512662353944 0.0 4 0.0 0.0 0.0 5.439640690035605 0.0 5 0.0 0.0 0.0 11.36070156963041 0.0 6 0.0 0.0 0.0 12.78004488240309 0.0 7 0.0 0.0 0.0 17.467466526252444 0.0 8 0.0 0.0 0.0 23.35953563010882 0.0 9 0.0 0.0 0.0 27.39221327917356 0.0 10 0.0 0.0 0.0 30.02059199638935 0.0 11 0.0 0.0 0.0 32.343068301489396 0.0 12 0.0 0.0 0.0 33.972562810290356 0.0 13 0.0 0.0 0.0 34.62573968206208 0.0 14 0.0 0.0 0.0 35.081615766511206 0.0 15 0.0 0.0 0.0 36.586210571185 0.0 16 0.0 0.0 0.0 38.36301464319743 0.0 17 0.0 0.0 0.0 40.37849155007272 0.0 18 0.0 0.0 0.0 41.355279324005814 0.0 19 0.0 0.0 0.0 42.39459530615315 0.0 20 0.0 0.0 0.0 43.435321699012086 0.0 21 1.5671230128880197E-4 0.0 0.0 44.43514618123464 0.0 22 3.1342460257760394E-4 0.0 0.0 45.48010380622837 0.0 23 4.701369038664059E-4 0.0 0.0 46.249247780953816 0.0 24 0.0015671230128880196 0.0 0.0 46.870141918660046 0.0 25 0.0015671230128880196 0.0 0.0 47.43493305250489 0.0 26 0.0015671230128880196 0.0 0.0 47.9763740534577 0.0 27 0.0015671230128880196 0.0 0.0 48.52424025876335 0.0 28 0.0015671230128880196 0.0 0.0 49.0567486585427 0.0 29 0.0015671230128880196 0.0 0.0 49.75411839927787 0.0 30 0.0015671230128880196 0.0 0.0 50.37626623539441 0.0 31 0.0015671230128880196 0.0 0.0 50.84420916704278 0.0 32 0.0015671230128880196 0.0 0.0 51.32562935660198 0.0 33 0.0015671230128880196 0.0 0.0 51.80219146482122 0.0 34 0.0015671230128880196 0.0 0.0 52.38061656887819 0.0 35 0.0015671230128880196 0.0 0.0 52.81768717717266 0.0 36 0.0015671230128880196 0.0 0.0 53.23250463868412 0.0 37 0.0015671230128880196 0.0 0.0 53.677410862043025 0.0 38 0.0015671230128880196 0.0 0.0 54.12686174213931 0.0 39 0.0015671230128880196 0.0 0.0 54.56252193972218 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCACC 30 2.1639771E-6 45.000004 30 GCCCATC 30 2.1639771E-6 45.000004 8 TCGCAGG 65 0.0 45.000004 1 AAATCCG 30 2.1639771E-6 45.000004 43 GTACAGG 140 0.0 45.000004 1 TTAGCAC 60 0.0 45.000004 29 GTTTAGA 35 1.2107921E-7 45.000004 30 TAGGTTG 30 2.1639771E-6 45.000004 35 AGGGTGC 35 1.2107921E-7 45.000004 5 TACGGGA 120 0.0 45.000004 3 CCTGTCA 30 2.1639771E-6 45.000004 28 TCGATGG 35 1.2107921E-7 45.000004 1 CCTCGCG 35 1.2107921E-7 45.000004 26 TAGCCGG 30 2.1639771E-6 45.000004 1 ATGTAGA 65 0.0 45.000004 39 GCATTAC 35 1.2107921E-7 45.000004 8 CTTATGG 60 0.0 45.000004 1 CTACGGC 30 2.1639771E-6 45.000004 2 CTTGCGG 140 0.0 45.000004 1 GTCACGG 30 2.1639771E-6 45.000004 1 >>END_MODULE