FastQCFastQC Report
Thu 26 May 2016
SRR1043235_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043235_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences395741
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT276286.981333751114997No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC34800.8793630177312939Illumina PCR Primer Index 2 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGCT31910.8063354567760228Illumina PCR Primer Index 2 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC28080.7095549867211131Illumina PCR Primer Index 2 (95% over 24bp)
CGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG13460.34012144306503495Illumina PCR Primer Index 2 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC13020.3290030600822255Illumina PCR Primer Index 2 (95% over 24bp)
ACCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG10760.2718950020341587Illumina PCR Primer Index 2 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCC10760.2718950020341587No Hit
GCCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG9300.23500218577301818Illumina PCR Primer Index 2 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC8010.20240510839159956Illumina PCR Primer Index 2 (95% over 24bp)
AGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG7860.1986147505565509Illumina PCR Primer Index 2 (95% over 23bp)
TCCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG6630.1675338163091517Illumina PCR Primer Index 2 (95% over 23bp)
CGGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCT6220.15717350489335197Illumina PCR Primer Index 2 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTC6160.15565736175933248Illumina PCR Primer Index 2 (95% over 21bp)
TGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGCTT6070.15338314705830328Illumina PCR Primer Index 2 (96% over 26bp)
TGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG5520.13948516832979144Illumina PCR Primer Index 2 (95% over 23bp)
GGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG5170.1306410000480112Illumina PCR Primer Index 2 (95% over 23bp)
ATCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG4660.1177537834088457Illumina PCR Primer Index 2 (95% over 23bp)
ATAGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTC4470.11295266348445068Illumina PCR Primer Index 2 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCT4370.1104257582610849Illumina PCR Primer Index 2 (95% over 22bp)
ATTGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTC4130.10436118572500701Illumina PCR Primer Index 2 (95% over 21bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTC4060.10259235206865096No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4000.1010762089346315No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGC3970.10031813736762175No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTTAGG650.045.0000041
TGGAGCG351.2092278E-745.00000435
TCGCAGG302.1618798E-645.0000041
CAAACGG351.2092278E-745.0000041
GGAGCGT351.2092278E-745.00000436
GTTCTGG351.2092278E-745.0000041
AATCAGG302.1618798E-645.0000041
CGACGGT302.1618798E-645.00000427
CATGCGG351.2092278E-745.0000041
TGGGTAC302.1618798E-645.0000045
GCTATGG650.045.0000041
ATTACGG351.2092278E-745.0000041
TAGCGCT302.1618798E-645.0000042
ACCGAGG302.1618798E-645.0000041
CCGTGGG302.1618798E-645.0000042
GGTCACA302.1618798E-645.0000048
CACGAGG302.1618798E-645.0000041
TGTGAGG700.045.0000041
ATCAAAG302.1618798E-645.00000410
ACGATGG302.1618798E-645.0000041