##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043234_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 497532 Sequences flagged as poor quality 0 Sequence length 52 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70840066568582 34.0 31.0 34.0 31.0 34.0 2 32.97947870689725 34.0 31.0 34.0 31.0 34.0 3 32.894089224411694 34.0 31.0 34.0 31.0 34.0 4 36.41741837710941 37.0 37.0 37.0 35.0 37.0 5 36.34584710129198 37.0 37.0 37.0 35.0 37.0 6 36.50120796250292 37.0 37.0 37.0 35.0 37.0 7 36.46961401477694 37.0 37.0 37.0 35.0 37.0 8 36.48487534470144 37.0 37.0 37.0 35.0 37.0 9 38.17209345328542 39.0 39.0 39.0 37.0 39.0 10 38.01971531479382 39.0 39.0 39.0 35.0 39.0 11 37.56782478312953 39.0 37.0 39.0 35.0 39.0 12 37.47354341027311 39.0 37.0 39.0 35.0 39.0 13 37.508407499417125 39.0 37.0 39.0 35.0 39.0 14 39.02144384682794 41.0 38.0 41.0 35.0 41.0 15 39.081845991815605 41.0 38.0 41.0 35.0 41.0 16 39.08700143910342 41.0 38.0 41.0 35.0 41.0 17 39.089887685616205 41.0 38.0 41.0 35.0 41.0 18 38.38221260140051 39.0 38.0 41.0 35.0 41.0 19 37.6109134688824 37.0 37.0 41.0 35.0 41.0 20 36.843350779447356 35.0 35.0 41.0 35.0 41.0 21 36.77973477082881 35.0 35.0 41.0 35.0 41.0 22 36.738354517900355 35.0 35.0 40.0 35.0 41.0 23 36.732288576413175 35.0 35.0 40.0 35.0 41.0 24 36.63229299823931 35.0 35.0 40.0 35.0 41.0 25 36.56061720653144 35.0 35.0 40.0 34.0 41.0 26 36.490499103575246 35.0 35.0 40.0 34.0 41.0 27 36.48194688984829 35.0 35.0 40.0 34.0 41.0 28 36.37266949663539 35.0 35.0 40.0 34.0 41.0 29 36.247451420210155 35.0 35.0 40.0 33.0 41.0 30 36.00825273550244 35.0 35.0 40.0 33.0 41.0 31 35.573545018209884 35.0 35.0 40.0 32.0 41.0 32 34.97995907800905 35.0 35.0 40.0 30.0 41.0 33 34.22894808776119 35.0 35.0 40.0 21.0 41.0 34 33.55421359832131 35.0 35.0 40.0 16.0 41.0 35 33.04646736290329 35.0 35.0 40.0 15.0 41.0 36 32.8744522965357 35.0 34.0 40.0 11.0 41.0 37 32.81752128506307 35.0 34.0 40.0 10.0 41.0 38 32.78226124148799 35.0 34.0 40.0 10.0 41.0 39 32.71877587773249 35.0 33.0 40.0 10.0 41.0 40 32.68989532331589 35.0 34.0 40.0 10.0 41.0 41 32.55755207705233 35.0 34.0 40.0 10.0 41.0 42 32.39765482421231 35.0 33.0 40.0 10.0 41.0 43 32.19143492277884 35.0 33.0 40.0 10.0 41.0 44 31.96981299695296 35.0 33.0 40.0 8.0 41.0 45 31.825790099933272 35.0 33.0 40.0 8.0 41.0 46 31.740340319818625 35.0 33.0 40.0 8.0 41.0 47 31.65067372550911 35.0 33.0 40.0 8.0 41.0 48 31.569824654494585 35.0 32.0 40.0 7.0 41.0 49 31.488668065571662 35.0 32.0 40.0 7.0 41.0 50 31.366511098783597 35.0 32.0 40.0 7.0 41.0 51 31.24218140742706 35.0 31.0 40.0 7.0 41.0 52 30.96247276557086 35.0 31.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 4.0 15 9.0 16 15.0 17 53.0 18 148.0 19 295.0 20 600.0 21 955.0 22 1659.0 23 3136.0 24 6617.0 25 12980.0 26 18657.0 27 19077.0 28 15011.0 29 11475.0 30 10014.0 31 9876.0 32 11100.0 33 13780.0 34 28235.0 35 69540.0 36 77171.0 37 23511.0 38 40383.0 39 123072.0 40 157.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.513719720540585 13.654599101163342 17.361697338060665 49.46998384023541 2 52.239654936767884 14.750207021859902 18.77627971668154 14.233858324690674 3 15.917770113279145 15.159225939236068 54.95023435678509 13.972769590699693 4 16.64556249648264 17.12191376635071 53.023323122934805 13.209200614231847 5 14.267022020694146 21.13230907760707 50.85723129366553 13.743437608033252 6 53.553942258990375 1.3806147142294365 42.58198467636253 2.4834583504176617 7 54.97093654277514 1.0724938295426223 40.403632329176816 3.552937298505423 8 48.98257800503284 2.1017743582322344 44.13846747545887 4.777180161276059 9 28.502086297966766 14.96828344709486 46.41852182372189 10.111108431216485 10 24.14719053246826 12.880377543554989 54.881696051711245 8.090735872265503 11 22.229725927176545 12.546730662550349 53.15416897807578 12.069374432197327 12 11.953401992233665 23.28654237315389 53.95733339765081 10.802722236961642 13 8.464782164765282 25.106927795599077 54.55628984668323 11.872000192952413 14 7.1394402772083 16.561949784134487 63.726755263983016 12.57185467467419 15 7.497809186142801 12.789931099909152 64.71181753133467 15.00044218261338 16 8.10902615309166 15.756976435686548 53.46630970470241 22.66768770651938 17 10.751268260132012 15.289468818086071 57.75246617303008 16.206796748751838 18 13.266483361874212 18.71759002436024 54.09722389715637 13.918702716609182 19 14.929290980278656 16.156950708698133 53.04201538795495 15.871742923068267 20 10.590876566733396 20.961063810970952 53.8554304044765 14.592629217819155 21 11.961441676113296 16.95328139697547 52.77369093847229 18.311585988438935 22 9.453663281959754 20.10343053311144 50.68437809025349 19.758528094675317 23 8.991783443075018 16.099868953152765 61.69753905276445 13.210808551007775 24 10.988438934581092 16.282168785123368 57.528158992788406 15.201233287507135 25 8.824357026281726 21.660717300595742 53.50490018732464 16.0100254857979 26 9.558782148685914 20.183023403519773 53.7097111341582 16.54848331363611 27 11.441274129101243 17.684892630021785 57.54705224990554 13.326780990971434 28 8.336147222691203 15.895258998416182 56.152770073080724 19.615823705811888 29 10.945627617922064 18.570865793556997 55.62476383428604 14.858742754234905 30 16.739224813680327 17.280898515070387 50.1587837566227 15.821092914626597 31 16.507279933753004 17.868197422477348 51.41277344974795 14.211749194021692 32 16.68274603442593 16.98001334587524 51.0403350940241 15.296905525674731 33 11.888481544905655 16.768167675646993 52.33874404058433 19.00460673886303 34 15.435389080501356 17.099201659390754 49.90754363538426 17.557865624723636 35 19.316948457586648 16.37120828409027 49.14457763520738 15.1672656231157 36 17.349637812241223 20.109862280215143 47.917118898884894 14.62338100865874 37 15.620703793926824 19.939822966160968 49.8522708087118 14.587202431200405 38 15.1433475635738 20.866597525385302 47.8996325864467 16.090422324594197 39 19.68436201088573 17.06905284484214 48.12172885362148 15.124856290650651 40 13.498227249704541 15.874556812426135 50.7971346566653 19.830081281204023 41 15.529051397699043 18.166268702314625 45.42421391990867 20.880465980077663 42 15.946913967342805 17.029256409637973 47.290023556273766 19.733806066745455 43 17.502190813857197 19.21524645650933 46.116229709847815 17.16633301978566 44 13.364165521011714 23.436080493315004 43.79858983944751 19.40116414622577 45 15.9621893667141 19.998512658482266 45.78760763126794 18.251690343535692 46 18.254705224990552 17.77172121592179 45.426625825072556 18.5469477340151 47 14.610718506548324 16.666867658763657 49.723434874540736 18.998978960147287 48 15.819685969947662 14.92507014624185 47.30369101886914 21.951552864941352 49 16.285585650772212 19.005611699347984 47.235755690086265 17.473046959793542 50 14.425202801025863 18.083459958354435 46.72101492969297 20.770322310926733 51 13.805946150197373 15.534880168511775 47.50408013956891 23.15509354172194 52 15.755368498910624 15.77365877973678 49.044885555099974 19.42608716625262 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 155.0 1 617.0 2 1079.0 3 48567.0 4 96055.0 5 52708.5 6 9362.0 7 9177.0 8 8992.0 9 9515.5 10 10039.0 11 10389.5 12 10740.0 13 10355.0 14 9220.0 15 8470.0 16 7623.5 17 6777.0 18 6201.0 19 5625.0 20 5195.0 21 4765.0 22 4551.0 23 4337.0 24 4104.5 25 3872.0 26 3902.5 27 3933.0 28 3627.0 29 3321.0 30 3596.5 31 3872.0 32 4668.5 33 5465.0 34 5738.5 35 6012.0 36 7085.5 37 8159.0 38 8632.0 39 9422.5 40 9740.0 41 14130.5 42 18521.0 43 24911.0 44 31301.0 45 34643.5 46 37986.0 47 41714.5 48 45443.0 49 44848.0 50 44253.0 51 37652.0 52 31051.0 53 24404.5 54 17758.0 55 14876.0 56 11994.0 57 10526.0 58 9058.0 59 7619.0 60 6180.0 61 5134.5 62 4089.0 63 3590.5 64 2467.0 65 1842.0 66 1602.5 67 1363.0 68 1117.0 69 871.0 70 834.5 71 798.0 72 843.0 73 888.0 74 744.0 75 600.0 76 447.5 77 295.0 78 229.5 79 164.0 80 122.5 81 81.0 82 60.5 83 40.0 84 26.5 85 13.0 86 7.0 87 1.0 88 2.0 89 2.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 497532.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.747209804596885 #Duplication Level Percentage of deduplicated Percentage of total 1 81.85907360113276 27.625153312273653 2 8.372908619806386 5.651246077346477 3 2.7948417281238176 2.8295433050890977 4 1.3795974493122194 1.862302582713047 5 0.812690312813878 1.3713015246346707 6 0.5432160528747267 1.099921566335304 7 0.4119225216644872 0.9730865033295039 8 0.3570464179564411 0.9639456301404644 9 0.26224031683894855 0.7964891092429159 >10 2.6329948008157906 20.176830911804675 >50 0.4785863468113636 10.756092224113493 >100 0.08652745671776524 5.071439787306924 >500 0.004773928646497392 1.140837326573233 >1k 0.0029837054040608704 1.7268632083610718 >5k 0.0 0.0 >10k+ 5.96741080812174E-4 17.954946930735446 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 89158 17.92005338350096 No Hit CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 2628 0.5282072308916813 TruSeq Adapter, Index 14 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCTT 1985 0.3989693125266315 TruSeq Adapter, Index 15 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 1499 0.30128715338912876 TruSeq Adapter, Index 14 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG 1354 0.27214329932547054 No Hit CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 1109 0.2229002355627377 TruSeq Adapter, Index 15 (95% over 21bp) CGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG 947 0.19033951585023676 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATTG 903 0.1814958635826439 No Hit TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 785 0.15777879613773585 TruSeq Adapter, Index 14 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 667 0.1340617286928278 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 657 0.13205180772292033 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT 611 0.122806171261346 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC 553 0.1111486296358827 No Hit ACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 542 0.1089377165689845 TruSeq Adapter, Index 15 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.411229830443067 0.0 2 0.0 0.0 0.0 1.5114605693704124 0.0 3 0.0 0.0 0.0 2.4621531881366425 0.0 4 0.0 0.0 0.0 3.1728612430959213 0.0 5 0.0 0.0 0.0 5.919820232668451 0.0 6 0.0 0.0 0.0 6.437173890322632 0.0 7 0.0 0.0 0.0 8.091740832750457 0.0 8 0.0 0.0 0.0 10.177837807417413 0.0 9 0.0 0.0 0.0 11.500365805616523 0.0 10 0.0 0.0 0.0 12.610445157296414 0.0 11 0.0 0.0 0.0 13.80775507907029 0.0 12 0.0 0.0 0.0 14.648103036588601 0.0 13 0.0 0.0 0.0 14.989186625181897 0.0 14 0.0 0.0 0.0 15.265550758544174 0.0 15 0.0 0.0 0.0 16.035149497921743 0.0 16 0.0 0.0 0.0 16.93680004502223 0.0 17 0.0 0.0 0.0 18.011906771825732 0.0 18 0.0 0.0 0.0 18.517602887854448 0.0 19 0.0 0.0 0.0 19.06992917038502 0.0 20 0.0 0.0 0.0 19.63773184438388 0.0 21 0.0 0.0 0.0 20.17940554577394 0.0 22 0.0 0.0 0.0 20.742786393639 0.0 23 2.0099209699074632E-4 0.0 0.0 21.176326346848043 0.0 24 0.001205952581944478 0.0 0.0 21.551779584026757 0.0 25 0.001205952581944478 0.0 0.0 21.912359406028155 0.0 26 0.001205952581944478 0.0 0.0 22.2502271210696 0.0 27 0.001205952581944478 0.0 0.0 22.588295828208036 0.0 28 0.001205952581944478 0.0 0.0 22.921942709212672 0.0 29 0.001205952581944478 0.0 0.0 23.34663901015412 0.0 30 0.001205952581944478 0.0 0.0 23.700586092954826 0.0 31 0.001205952581944478 0.0 0.0 24.004486143604833 0.0 32 0.001205952581944478 0.0 0.0 24.2963266684354 0.0 33 0.001205952581944478 0.0 0.0 24.580328501483322 0.0 34 0.001205952581944478 0.0 0.0 24.969449201257408 0.0 35 0.001205952581944478 0.0 0.0 25.26108873399098 0.0 36 0.001205952581944478 0.0 0.0 25.54870842478474 0.0 37 0.0014069446789352243 0.0 0.0 25.82406759766206 0.0 38 0.0016079367759259705 0.0 0.0 26.11691308297758 0.0 39 0.002009920969907463 0.0 0.0 26.39548812940675 0.0 40 0.0022109130668982097 0.0 0.0 26.68873559891625 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATCTAC 75 0.0 46.000004 13 GCCTATG 75 0.0 46.000004 8 TGCAAGG 75 0.0 46.000004 1 GTTGAGG 170 0.0 46.0 1 GTTTGGC 20 6.307987E-4 46.0 21 ATGGGTG 20 6.307987E-4 46.0 4 CAGGTAT 20 6.307987E-4 46.0 26 AACGTCG 20 6.307987E-4 46.0 42 TGGAGTT 20 6.307987E-4 46.0 22 AGCCGTC 20 6.307987E-4 46.0 34 ATCTCGG 25 3.4143428E-5 46.0 1 GCCTTGC 20 6.307987E-4 46.0 16 CCGGGTC 20 6.307987E-4 46.0 12 CAAACTA 20 6.307987E-4 46.0 42 GCCTTAG 20 6.307987E-4 46.0 16 ACACGGT 20 6.307987E-4 46.0 30 ATAGGTG 135 0.0 46.0 23 CAACGCA 50 1.6370905E-11 46.0 16 CGACGGT 30 1.85926E-6 46.0 27 GAGTCTA 25 3.4143428E-5 46.0 27 >>END_MODULE