SRR1043233_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043233_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	485320
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	84720	17.45652353086623	No Hit
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	2646	0.5452072859144482	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	1976	0.40715404269348066	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1514	0.3119591197560373	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC	1319	0.2717794444902332	No Hit
CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG	1073	0.2210912387702959	No Hit
CGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT	990	0.20398912058023572	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	875	0.18029341465424875	No Hit
TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	799	0.16463364378142256	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC	633	0.13042940740130224	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	608	0.1252781669826094	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	593	0.12218742273139371	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC	548	0.11291518997774665	No Hit
GCCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG	511	0.10529135415808127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAA	20	7.0292526E-4	45.000004	26
TCACGAC	45	3.8380676E-10	45.000004	24
CTTAAGG	35	1.2099918E-7	45.000004	1
GTCATGG	35	1.2099918E-7	45.000004	1
GTCATAA	20	7.0292526E-4	45.000004	44
AGGTATG	20	7.0292526E-4	45.000004	14
TGTCAGG	30	2.1629003E-6	45.000004	1
CCTTAGC	20	7.0292526E-4	45.000004	42
CTCACGA	45	3.8380676E-10	45.000004	23
TCGCAGG	35	1.2099918E-7	45.000004	1
GCCCACA	40	6.8012014E-9	45.000004	12
ACCGGGT	20	7.0292526E-4	45.000004	3
AGATCGT	20	7.0292526E-4	45.000004	42
ACCGGCC	30	2.1629003E-6	45.000004	20
TGCCCAC	40	6.8012014E-9	45.000004	11
GATAATC	20	7.0292526E-4	45.000004	8
TTAATCG	30	2.1629003E-6	45.000004	19
ATAGGTG	90	0.0	45.000004	23
TTTACGG	60	0.0	45.000004	1
CGACGGT	45	3.8380676E-10	45.000004	27