##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043233_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 485320 Sequences flagged as poor quality 0 Sequence length 51 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53181612132202 33.0 31.0 34.0 31.0 34.0 2 32.883141020357705 34.0 31.0 34.0 31.0 34.0 3 32.790340393966865 34.0 31.0 34.0 31.0 34.0 4 36.377072859144484 37.0 37.0 37.0 35.0 37.0 5 36.35199249979395 37.0 37.0 37.0 35.0 37.0 6 36.50134138300503 37.0 37.0 37.0 35.0 37.0 7 36.49179922525344 37.0 37.0 37.0 35.0 37.0 8 36.444411934393806 37.0 37.0 37.0 35.0 37.0 9 38.133579906041376 39.0 39.0 39.0 37.0 39.0 10 37.97380697271903 39.0 39.0 39.0 35.0 39.0 11 37.5558353251463 39.0 37.0 39.0 35.0 39.0 12 37.44433363553944 39.0 37.0 39.0 35.0 39.0 13 37.484688452979476 39.0 37.0 39.0 35.0 39.0 14 39.004553696530124 41.0 38.0 41.0 35.0 41.0 15 39.07815668012857 41.0 38.0 41.0 35.0 41.0 16 39.09226077639496 41.0 38.0 41.0 35.0 41.0 17 39.086196736174074 41.0 38.0 41.0 35.0 41.0 18 38.4090785461139 39.0 38.0 41.0 35.0 41.0 19 37.67344020440122 37.0 37.0 41.0 35.0 41.0 20 36.92076568037584 35.0 35.0 41.0 35.0 41.0 21 36.86394749855765 35.0 35.0 41.0 35.0 41.0 22 36.826903898458745 35.0 35.0 41.0 35.0 41.0 23 36.79409049699168 35.0 35.0 40.0 35.0 41.0 24 36.70159688452979 35.0 35.0 40.0 35.0 41.0 25 36.67315379543394 35.0 35.0 40.0 35.0 41.0 26 36.58906288634303 35.0 35.0 40.0 34.0 41.0 27 36.58586705678727 35.0 35.0 40.0 34.0 41.0 28 36.48245487513393 35.0 35.0 40.0 34.0 41.0 29 36.377044012198134 35.0 35.0 40.0 34.0 41.0 30 36.089233907524935 35.0 35.0 40.0 33.0 41.0 31 35.64656103189648 35.0 35.0 40.0 33.0 41.0 32 35.065480507706255 35.0 35.0 40.0 30.0 41.0 33 34.276413500370886 35.0 35.0 40.0 21.0 41.0 34 33.57980095607022 35.0 35.0 40.0 16.0 41.0 35 33.11685073765763 35.0 35.0 40.0 15.0 41.0 36 32.93207368334295 35.0 34.0 40.0 12.0 41.0 37 32.847298689524436 35.0 34.0 40.0 12.0 41.0 38 32.80963075908679 35.0 34.0 40.0 11.0 41.0 39 32.690952361328605 35.0 33.0 40.0 10.0 41.0 40 32.63707244704525 35.0 33.0 40.0 10.0 41.0 41 32.46776147696365 35.0 33.0 40.0 10.0 41.0 42 32.29243797906536 35.0 33.0 40.0 10.0 41.0 43 32.06864749031567 35.0 33.0 40.0 10.0 41.0 44 31.90686969422237 35.0 33.0 40.0 8.0 41.0 45 31.790031319541747 35.0 33.0 40.0 8.0 41.0 46 31.66152229456853 35.0 33.0 40.0 8.0 41.0 47 31.525504821561032 35.0 32.0 40.0 8.0 41.0 48 31.467215445479273 35.0 32.0 40.0 7.0 41.0 49 31.37388733206956 35.0 31.0 39.0 7.0 41.0 50 31.270201104425947 35.0 31.0 39.0 7.0 41.0 51 30.899905217176297 35.0 30.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 2.0 16 9.0 17 33.0 18 114.0 19 254.0 20 481.0 21 788.0 22 1342.0 23 2398.0 24 5019.0 25 10603.0 26 16795.0 27 19613.0 28 16232.0 29 12363.0 30 10401.0 31 9992.0 32 10813.0 33 13600.0 34 28558.0 35 69030.0 36 71803.0 37 23567.0 38 42641.0 39 118858.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.895120745075413 13.739182395120745 17.450960191214044 48.914736668589796 2 51.73452567378225 14.861946756779032 19.023118766999094 14.380408802439629 3 16.082584686392483 15.25488337591692 54.55287233165747 14.109659606033132 4 16.8513558064782 17.420258798318635 52.27231517349378 13.456070221709387 5 14.525673782246765 21.347976592763537 50.280021429160136 13.846328195829555 6 54.29345586417209 1.364666611720102 41.83054479518668 2.5113327289211242 7 55.73436083408885 1.0102612709140362 39.6670238193357 3.588354075661419 8 49.570592598697765 2.0596719690101373 43.42825352344845 4.94148190884365 9 28.873732794857 15.119714827330421 45.75517184538037 10.25138053243221 10 24.574713591032722 13.021511579988463 54.233289376081764 8.170485452897058 11 22.552542652270667 12.566141926976016 52.62136322426441 12.259952196488914 12 12.344844638588972 23.35407566141927 53.36375999340641 10.937319706585345 13 8.64316327371631 25.28105167724388 54.03816038902167 12.037624660018134 14 7.273963570427759 16.784801780268687 63.241366521058275 12.699868128245281 15 7.762507211736586 12.904269348059014 64.15560867056787 15.177614769636527 16 8.204895738893926 15.780515948240337 53.00214291601417 23.01244539685156 17 11.074960850572818 15.288881562680293 57.14435836149345 16.49179922525344 18 13.51994560290118 18.87002390175554 53.59185691914613 14.01817357619715 19 15.028640896727932 16.320571993736092 52.439833511909676 16.21095359762631 20 10.767946921618726 21.079493942141266 53.441440698920296 14.711118437319707 21 12.10253028929366 17.035152064617158 52.167023819335704 18.69529382675348 22 9.678150498640074 20.0811835489986 50.2210912387703 20.01957471359103 23 9.208151322838539 16.149962911068986 61.083820984092974 13.558064781999505 24 11.191172834418527 16.361987966702383 56.88494189400808 15.561897304871014 25 8.80450012362977 21.815503173164096 53.00688205719938 16.37311464600676 26 9.688452979477457 20.225624330338746 53.26217753234979 16.823745157834004 27 11.58740624742438 17.68029341465425 57.19772521223111 13.534575125690266 28 8.488420011538778 16.03766586994148 55.56643039643946 19.907483722080276 29 11.110401384653425 18.58546938102695 55.08530454133356 15.218824692986072 30 16.98570015659771 17.38007912305283 49.57038654908102 16.06383417126844 31 16.86866397428501 17.85770213467403 50.76897716970247 14.504656721338499 32 17.02340723646254 16.86577927965054 50.505027610648646 15.605785873238275 33 12.067089755213054 16.71536305942471 51.86866397428501 19.34888321107723 34 15.783400642874804 17.05678727437567 49.29819500535729 17.861617077392236 35 19.52794032803099 16.346122146212807 48.78348306272151 15.342454463034699 36 17.733866315008655 19.95054809198055 47.46105662243468 14.854528970576114 37 16.015000412099234 19.82959696694964 49.55287233165746 14.60253028929366 38 15.607846369405753 20.6667765597956 47.49855765268276 16.22681941811588 39 20.1800873650375 16.9955905382016 47.73510261270914 15.08921948405176 40 13.806560619797247 15.556952114069066 50.5138877441688 20.12259952196489 41 15.941646748537048 18.143699002719853 44.952402538531274 20.962251710211817 42 16.23691584933652 16.959119756037254 46.89153548174401 19.91242891288222 43 17.91539602736339 19.12428912882222 45.76217753234979 17.1981373114646 44 13.739182395120745 23.146583697354323 43.61101953350367 19.503214374021262 45 16.26493859721421 19.874103684167146 45.41601417621363 18.444943542405014 46 18.61967361740707 17.629193109700818 45.20872826176544 18.54240501112668 47 14.932415725706749 16.45409214538861 49.52031649221132 19.093175636693317 48 16.095977911481086 14.8333058600511 46.96756779032391 22.103148438143904 49 16.52950630511827 18.71713508612874 47.01537130140938 17.73798730734361 50 14.81785213879502 17.85873238275777 46.445644111101956 20.877771367345257 51 14.341053325640814 15.488543641308826 46.61584109453557 23.554561938514794 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 103.0 1 551.5 2 1000.0 3 46090.0 4 91180.0 5 50502.5 6 9825.0 7 9567.5 8 9310.0 9 9954.5 10 10599.0 11 10690.5 12 10782.0 13 10149.0 14 9516.0 15 8610.0 16 7704.0 17 7042.5 18 6381.0 19 5677.0 20 4973.0 21 4595.5 22 4218.0 23 4001.0 24 3784.0 25 3560.0 26 3321.5 27 3307.0 28 3145.5 29 2984.0 30 3795.5 31 4607.0 32 4650.5 33 4694.0 34 5823.5 35 6953.0 36 7901.0 37 8849.0 38 8806.0 39 8763.0 40 11708.0 41 14653.0 42 20043.5 43 25434.0 44 27913.5 45 30393.0 46 33748.5 47 37104.0 48 42094.0 49 47084.0 50 45066.0 51 43048.0 52 34373.5 53 25699.0 54 20525.0 55 15351.0 56 12859.0 57 10367.0 58 8884.5 59 7402.0 60 5930.5 61 4459.0 62 3859.5 63 3260.0 64 2884.0 65 2508.0 66 1980.0 67 1452.0 68 1264.0 69 1076.0 70 985.5 71 895.0 72 837.5 73 780.0 74 770.0 75 559.5 76 359.0 77 280.5 78 202.0 79 140.5 80 79.0 81 69.0 82 59.0 83 37.5 84 16.0 85 12.5 86 9.0 87 4.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 485320.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.729471057630235 #Duplication Level Percentage of deduplicated Percentage of total 1 81.4414330400077 27.4697645861487 2 8.543573736036118 5.763404461167201 3 2.8829444727358067 2.917205764616923 4 1.3682474803101143 1.8460105514718197 5 0.830623086988601 1.4008238686190746 6 0.5775060672319495 1.1687384508183538 7 0.4506569205745705 1.064029369160852 8 0.3380607516822889 0.9122088271670787 9 0.2831919743784734 0.8596723953196692 >10 2.717197314207919 20.65182240793497 >50 0.47468972516863767 10.605295300717914 >100 0.0833003904812061 4.928505954999154 >500 0.0049000229694827115 1.1480427394336978 >1k 0.003062514355926695 1.7618334500432924 >5k 0.0 0.0 >10k+ 6.125028711853389E-4 17.5026418723813 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 84720 17.45652353086623 No Hit CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 2646 0.5452072859144482 TruSeq Adapter, Index 14 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT 1976 0.40715404269348066 TruSeq Adapter, Index 15 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 1514 0.3119591197560373 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCC 1319 0.2717794444902332 No Hit CGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG 1073 0.2210912387702959 No Hit CGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCT 990 0.20398912058023572 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 875 0.18029341465424875 No Hit TCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC 799 0.16463364378142256 TruSeq Adapter, Index 14 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC 633 0.13042940740130224 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 608 0.1252781669826094 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 593 0.12218742273139371 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC 548 0.11291518997774665 No Hit GCCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG 511 0.10529135415808127 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4166323250638754 0.0 2 0.0 0.0 0.0 1.5593834995466909 0.0 3 0.0 0.0 0.0 2.5309074425121567 0.0 4 0.0 0.0 0.0 3.2681529712354735 0.0 5 0.0 0.0 0.0 6.0582708316162535 0.0 6 0.0 0.0 0.0 6.572776724635292 0.0 7 0.0 0.0 0.0 8.282370394791066 0.0 8 0.0 0.0 0.0 10.42528640896728 0.0 9 0.0 0.0 0.0 11.807467238110936 0.0 10 0.0 0.0 0.0 12.992252534410285 0.0 11 0.0 0.0 0.0 14.226283689112337 0.0 12 0.0 0.0 0.0 15.105703453391577 0.0 13 0.0 0.0 0.0 15.470411275035028 0.0 14 0.0 0.0 0.0 15.74589961262672 0.0 15 0.0 0.0 0.0 16.559177449929944 0.0 16 0.0 0.0 0.0 17.496291106898543 0.0 17 0.0 0.0 0.0 18.611225583120415 0.0 18 0.0 0.0 0.0 19.126555674606447 0.0 19 0.0 0.0 0.0 19.72677820819253 0.0 20 0.0 0.0 0.0 20.32720679139537 0.0 21 4.120992334954257E-4 0.0 0.0 20.868911233825106 0.0 22 0.0010302480837385641 0.0 0.0 21.464394626225996 0.0 23 0.0012362977004862772 0.0 0.0 21.899571416797166 0.0 24 0.002678645017720267 0.0 0.0 22.270460726943046 0.0 25 0.002678645017720267 0.0 0.0 22.615799884612215 0.0 26 0.002678645017720267 0.0 0.0 22.978653259704938 0.0 27 0.002678645017720267 0.0 0.0 23.318429077721916 0.0 28 0.002678645017720267 0.0 0.0 23.67736751009643 0.0 29 0.002678645017720267 0.0 0.0 24.12346493035523 0.0 30 0.002678645017720267 0.0 0.0 24.517225747960108 0.0 31 0.002678645017720267 0.0 0.0 24.81805818841177 0.0 32 0.002678645017720267 0.0 0.0 25.11621198384571 0.0 33 0.002678645017720267 0.0 0.0 25.41065688617819 0.0 34 0.002678645017720267 0.0 0.0 25.820283524272647 0.0 35 0.002678645017720267 0.0 0.0 26.121115964724307 0.0 36 0.002678645017720267 0.0 0.0 26.4233907524932 0.0 37 0.0030907442512156926 0.0 0.0 26.713096513640483 0.0 38 0.0030907442512156926 0.0 0.0 27.01248660677491 0.0 39 0.003914942718206544 0.0 0.0 27.312288799142834 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAAA 20 7.0292526E-4 45.000004 26 TCACGAC 45 3.8380676E-10 45.000004 24 CTTAAGG 35 1.2099918E-7 45.000004 1 GTCATGG 35 1.2099918E-7 45.000004 1 GTCATAA 20 7.0292526E-4 45.000004 44 AGGTATG 20 7.0292526E-4 45.000004 14 TGTCAGG 30 2.1629003E-6 45.000004 1 CCTTAGC 20 7.0292526E-4 45.000004 42 CTCACGA 45 3.8380676E-10 45.000004 23 TCGCAGG 35 1.2099918E-7 45.000004 1 GCCCACA 40 6.8012014E-9 45.000004 12 ACCGGGT 20 7.0292526E-4 45.000004 3 AGATCGT 20 7.0292526E-4 45.000004 42 ACCGGCC 30 2.1629003E-6 45.000004 20 TGCCCAC 40 6.8012014E-9 45.000004 11 GATAATC 20 7.0292526E-4 45.000004 8 TTAATCG 30 2.1629003E-6 45.000004 19 ATAGGTG 90 0.0 45.000004 23 TTTACGG 60 0.0 45.000004 1 CGACGGT 45 3.8380676E-10 45.000004 27 >>END_MODULE