SRR1043230_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043230_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1800490
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	74050	4.112769301690095	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	9187	0.5102499875034018	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	9000	0.4998639259312742	Illumina Single End Adapter 1 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCTT	7656	0.4252175796588706	Illumina Single End Adapter 1 (95% over 23bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	5933	0.3295214080611389	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	5376	0.29858538508961446	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	3749	0.208221095368483	Illumina Single End Adapter 1 (95% over 21bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA	3409	0.1893373470555238	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	2937	0.16312226116223918	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2498	0.13874000966403588	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2425	0.13468555782037112	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	2344	0.13018678248698964	Illumina Single End Adapter 1 (95% over 22bp)
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2110	0.11719032041277652	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	2016	0.11196951940860543	Illumina Single End Adapter 1 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT	1899	0.10547128837149887	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGTC	25	3.4179327E-5	46.0	13
AACCTCG	25	3.4179327E-5	46.0	27
GCTAACG	20	6.312413E-4	46.0	30
TACGTCA	25	3.4179327E-5	46.0	14
CGTTTTT	17570	0.0	45.20148	1
TACCGGT	95	0.0	43.578945	40
CGGGCAA	160	0.0	43.125	5
ATAACGG	80	0.0	43.125	1
ATTACGG	145	0.0	42.827587	1
TAGTCAG	430	0.0	42.790695	33
CGACGGT	365	0.0	42.219177	27
TCGGGTA	60	1.8189894E-12	42.166668	4
TTACGGG	535	0.0	42.13084	2
TACGGGA	295	0.0	42.101692	3
TAGTAGG	425	0.0	41.670586	1
AGGGTAA	635	0.0	41.653545	5
GCATAGG	370	0.0	41.64865	1
TCCGTAC	105	0.0	41.61905	46
CCAACGG	105	0.0	41.61905	1
GTACGGG	420	0.0	41.61905	2