FastQCFastQC Report
Thu 26 May 2016
SRR1043229_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043229_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1762260
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT697623.9586667120629193No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC90570.5139423240611488No Hit
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC84860.48154074881118564Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT75430.4280299161304234Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC53120.3014311168613031Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG50310.2854856831568554No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG36580.20757436473619104No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA33220.18850793866966284No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCC26440.15003461464256126No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC24250.1376073905099134No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC24000.13618875761805863No Hit
TCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC22410.12716625242586224Illumina Single End Adapter 1 (95% over 21bp)
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC19270.10934822330416624No Hit
GCCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG19020.10792959041231145No Hit
CGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT18070.10253878542326332No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC18040.10236854947624073No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTACGG1450.045.0000041
TATGCGT207.034312E-445.09
AACGCGT207.034312E-445.013
GTAAGTC207.034312E-445.030
TTCGATC207.034312E-445.023
CGTTTTT173400.043.987891
ACGGGTA1550.043.5483864
ACGTAGG1250.043.21
CTTGCGG6950.043.0575521
ACGGGAT2300.043.043484
CACGACG4250.042.8823525
ATACGGG3850.042.662342
TACGGGC3750.042.6000023
TATACGG850.042.352941
TTACGGG5350.042.0560722
ACTACGG750.042.01
CTCACGT3500.041.78571344
AGGGTAA7200.041.56255
CGGTCTA4350.041.3793130
CTAACGG1200.041.2499961