SRR1043229_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043229_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1762260
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69762	3.9586667120629193	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9057	0.5139423240611488	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	8486	0.48154074881118564	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	7543	0.4280299161304234	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	5312	0.3014311168613031	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	5031	0.2854856831568554	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	3658	0.20757436473619104	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3322	0.18850793866966284	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCC	2644	0.15003461464256126	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2425	0.1376073905099134	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2400	0.13618875761805863	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	2241	0.12716625242586224	Illumina Single End Adapter 1 (95% over 21bp)
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	1927	0.10934822330416624	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	1902	0.10792959041231145	No Hit
CGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT	1807	0.10253878542326332	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	1804	0.10236854947624073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGG	145	0.0	45.000004	1
TATGCGT	20	7.034312E-4	45.0	9
AACGCGT	20	7.034312E-4	45.0	13
GTAAGTC	20	7.034312E-4	45.0	30
TTCGATC	20	7.034312E-4	45.0	23
CGTTTTT	17340	0.0	43.98789	1
ACGGGTA	155	0.0	43.548386	4
ACGTAGG	125	0.0	43.2	1
CTTGCGG	695	0.0	43.057552	1
ACGGGAT	230	0.0	43.04348	4
CACGACG	425	0.0	42.88235	25
ATACGGG	385	0.0	42.66234	2
TACGGGC	375	0.0	42.600002	3
TATACGG	85	0.0	42.35294	1
TTACGGG	535	0.0	42.056072	2
ACTACGG	75	0.0	42.0	1
CTCACGT	350	0.0	41.785713	44
AGGGTAA	720	0.0	41.5625	5
CGGTCTA	435	0.0	41.37931	30
CTAACGG	120	0.0	41.249996	1