##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043228_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 651794 Sequences flagged as poor quality 0 Sequence length 52 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27354501575651 33.0 31.0 34.0 31.0 34.0 2 32.58235730921119 34.0 31.0 34.0 31.0 34.0 3 32.64960248176571 34.0 31.0 34.0 31.0 34.0 4 36.17080089721599 37.0 35.0 37.0 35.0 37.0 5 36.05588882376947 37.0 35.0 37.0 35.0 37.0 6 36.29295452244114 37.0 37.0 37.0 35.0 37.0 7 36.20322218369608 37.0 37.0 37.0 35.0 37.0 8 36.206839891131246 37.0 37.0 37.0 35.0 37.0 9 37.81215537424401 39.0 38.0 39.0 35.0 39.0 10 37.65935096057957 39.0 37.0 39.0 35.0 39.0 11 37.31352237056493 39.0 37.0 39.0 35.0 39.0 12 37.26130955485936 39.0 37.0 39.0 34.0 39.0 13 37.27067294267821 39.0 37.0 39.0 34.0 39.0 14 38.694466349797636 40.0 38.0 41.0 35.0 41.0 15 38.78176847286106 41.0 38.0 41.0 35.0 41.0 16 38.787070761621 41.0 38.0 41.0 35.0 41.0 17 38.77630509025858 40.0 38.0 41.0 35.0 41.0 18 38.51423762722578 40.0 38.0 41.0 35.0 41.0 19 38.241688324838826 40.0 37.0 41.0 35.0 41.0 20 37.94857117432809 40.0 35.0 41.0 34.0 41.0 21 37.908457273310276 40.0 35.0 41.0 34.0 41.0 22 37.86008462796528 40.0 35.0 41.0 34.0 41.0 23 37.85994961598296 40.0 35.0 41.0 34.0 41.0 24 37.77073124330693 40.0 35.0 41.0 34.0 41.0 25 37.687168031617354 39.0 35.0 41.0 34.0 41.0 26 37.648402716195605 39.0 35.0 41.0 34.0 41.0 27 37.68141314587124 39.0 35.0 41.0 34.0 41.0 28 37.69626292969865 40.0 35.0 41.0 34.0 41.0 29 37.62674249839673 40.0 35.0 41.0 34.0 41.0 30 37.56727432286888 40.0 35.0 41.0 34.0 41.0 31 37.390680184229986 40.0 35.0 41.0 34.0 41.0 32 37.23722065560591 40.0 35.0 41.0 33.0 41.0 33 37.015184245329046 40.0 35.0 41.0 33.0 41.0 34 36.758690629247894 39.0 35.0 41.0 32.0 41.0 35 36.616762351295044 39.0 35.0 41.0 32.0 41.0 36 36.5575488574611 39.0 35.0 41.0 32.0 41.0 37 36.39689533809762 39.0 35.0 41.0 31.0 41.0 38 36.399880943979234 39.0 35.0 41.0 31.0 41.0 39 36.309129878458535 39.0 35.0 41.0 31.0 41.0 40 36.24522778669334 39.0 35.0 41.0 31.0 41.0 41 36.23524763959165 39.0 35.0 41.0 31.0 41.0 42 36.21570618937885 39.0 35.0 41.0 31.0 41.0 43 36.13161520357659 39.0 35.0 41.0 31.0 41.0 44 36.003804883137924 38.0 35.0 41.0 30.0 41.0 45 35.97231026980917 38.0 35.0 41.0 30.0 41.0 46 35.98348404557268 39.0 35.0 41.0 30.0 41.0 47 35.90756128470038 38.0 35.0 41.0 30.0 41.0 48 35.88102989594872 38.0 35.0 41.0 30.0 41.0 49 35.82386459525556 38.0 35.0 40.0 30.0 41.0 50 35.71688447576995 38.0 35.0 40.0 30.0 41.0 51 35.63416202051568 38.0 35.0 40.0 29.0 41.0 52 35.337264534500164 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 2.0 15 4.0 16 15.0 17 51.0 18 92.0 19 191.0 20 351.0 21 605.0 22 1031.0 23 1771.0 24 3385.0 25 5875.0 26 8158.0 27 8562.0 28 7851.0 29 7955.0 30 9047.0 31 10831.0 32 14232.0 33 18907.0 34 34642.0 35 73958.0 36 68328.0 37 47455.0 38 76939.0 39 250983.0 40 570.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.82964249440774 19.206221597621333 24.19153904454475 29.772596863426177 2 33.38846322611132 19.60466036815313 26.759835162643412 20.24704124309214 3 21.142876430283188 21.844478470191504 38.11787159746791 18.8947735020574 4 23.17496018680749 24.30399788890355 35.2585326038595 17.262509320429462 5 19.673240318260063 29.126533843514974 31.347941220692427 19.852284617532533 6 71.13704636741056 1.5329996900861316 22.77099819881742 4.558955743685889 7 70.97104299824791 1.531925731135911 18.635335704225568 8.861695566390608 8 57.82194987987002 2.80011782863911 28.61318146530959 10.764750826181277 9 32.6043197697432 18.937271591944693 30.306968152514447 18.15144048579766 10 26.154429160133418 17.22154545761391 44.55272678177461 12.071298600478066 11 23.468457825632026 14.401329254334957 40.76518040976136 21.36503251027165 12 15.680107518633188 22.022909078635276 44.69264829071762 17.60433511201392 13 10.815073474134467 25.85249327241429 43.13678861726251 20.195644636188735 14 8.681730730875092 22.21652853508931 48.91253985154819 20.189200882487413 15 8.660098129163508 18.202837092701067 51.85395999349488 21.283104784640546 16 9.509446236080725 24.471535485137945 40.70227709981988 25.31674117896145 17 12.0040994547357 22.33650509209965 43.12881063648945 22.530584816675205 18 13.951187031485407 29.51561382890913 40.15931413912985 16.37388500047561 19 14.418512597538486 23.549925283141608 36.767751774333604 25.263810344986297 20 11.062390878099523 31.7871904313326 35.49050773710712 21.659910953460756 21 12.638195503487298 24.67973009877354 35.6844340389755 26.997640358763658 22 10.144923089196894 28.343157500682732 31.676112391338368 29.835807018782006 23 9.738506337892034 23.496227335630582 44.33977606421661 22.425490262260777 24 15.51272334510597 21.685992813680397 39.971064477426914 22.830219363786718 25 11.080034489424573 25.700604792311683 39.77652448472983 23.44283623353391 26 14.094483839986252 22.529817703139337 38.2333988959702 25.142299560904213 27 20.71958318118915 22.17034830022983 40.359377349285204 16.75069116929582 28 14.961935826350043 21.563714916062438 35.699316041571414 27.775033216016105 29 16.4541250763278 21.98992319659279 37.50893687269291 24.047014854386507 30 24.42029230094171 22.23954194116546 29.54062173017855 23.79954402771428 31 18.60511143091222 21.930241763501964 37.51430666744401 21.950340138141804 32 19.359644304795687 22.60959751087 33.35302258075404 24.677735603580274 33 18.428215049540192 24.35232604166347 37.735849056603776 19.48360985219256 34 17.09435803336637 22.972595636044517 37.033019635038066 22.90002669555105 35 17.73152253626146 27.705992997787643 33.36544982003517 21.197034645915735 36 20.461833033136237 29.970358732973917 30.191440854012157 19.376367379877692 37 15.295016523625563 34.386017668158956 33.57947449654339 16.73949131167209 38 17.6379346848851 31.271229867105248 29.37492520643025 21.715910241579394 39 25.0975001304093 25.13907768405355 32.58422139510336 17.17920079043379 40 18.380807433023318 20.367324645516835 38.64150329705397 22.61036462440587 41 21.101452299346114 23.049767257753217 32.37648704958929 23.472293393311382 42 21.97764938001884 16.97806362132821 38.01277704305348 23.031509955599468 43 23.850480366496164 21.015075315206953 35.63533877267972 19.499105545617173 44 14.807592582932644 25.937182606774535 35.62337180152011 23.631853008772712 45 18.934203137801205 24.0548394124524 34.5885356416291 22.42242180811729 46 24.18218025940711 20.0325562984624 33.61077272880696 22.174490713323536 47 17.963651092216253 18.042050095582347 37.94619158813981 26.04810722406159 48 19.67707588593942 15.322172342795422 32.924666382323245 32.076085388941905 49 20.324673132922367 16.561367548642668 39.33328628370313 23.780673034731834 50 18.81698818952 16.149887848001054 39.09502081946136 25.938103143017578 51 15.763876316750384 14.957486567841988 39.03196408681271 30.246673028594923 52 14.672887446033563 14.357143514668744 47.92373050380949 23.046238535488207 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 220.0 1 987.5 2 1755.0 3 24726.5 4 47698.0 5 25688.5 6 3679.0 7 3620.5 8 3562.0 9 3877.0 10 4192.0 11 4347.5 12 4503.0 13 4445.0 14 4130.0 15 3873.0 16 3523.0 17 3173.0 18 2913.5 19 2654.0 20 2491.0 21 2328.0 22 2202.5 23 2077.0 24 2149.5 25 2222.0 26 2366.0 27 2510.0 28 2509.0 29 2508.0 30 3065.5 31 3623.0 32 4435.0 33 5247.0 34 5640.0 35 6033.0 36 6997.0 37 7961.0 38 9618.5 39 14316.5 40 17357.0 41 25289.5 42 33222.0 43 50301.5 44 67381.0 45 89219.5 46 111058.0 47 112209.5 48 113361.0 49 94669.0 50 75977.0 51 58316.0 52 40655.0 53 31259.5 54 21864.0 55 17405.0 56 12946.0 57 10785.0 58 8624.0 59 7592.5 60 6561.0 61 5767.5 62 4974.0 63 4110.0 64 2783.0 65 2320.0 66 1968.0 67 1616.0 68 1431.0 69 1246.0 70 1125.5 71 1005.0 72 1112.5 73 1220.0 74 998.0 75 776.0 76 652.5 77 529.0 78 371.0 79 213.0 80 162.0 81 111.0 82 72.5 83 34.0 84 21.0 85 8.0 86 6.5 87 5.0 88 2.5 89 1.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 651794.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.52143705010653 #Duplication Level Percentage of deduplicated Percentage of total 1 72.99969858315825 20.82056307816299 2 11.529056769945596 6.576505338222158 3 4.702963405375499 4.024058241461158 4 2.391552002526922 2.7284199956851127 5 1.4479201750056854 2.0648382062501947 6 0.921894827885667 1.5776259180215908 7 0.6672017257920101 1.332068641532948 8 0.5101085766276386 1.1639223725603711 9 0.38986294909752284 1.0007506404768496 >10 3.641713677036157 23.11097104786191 >50 0.5471569344442497 10.580110854674805 >100 0.23465030587826083 11.865268176681045 >500 0.00865070252085754 1.6495473810298027 >1k 0.00594735798308956 2.786358009519258 >5k 0.0010813378151071926 1.796197802583448 >10k+ 5.406689075535963E-4 6.922794295276333 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44893 6.887605593178213 No Hit CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 6001 0.9206896657532903 No Hit CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCTT 5647 0.8663780274135693 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 3825 0.5868418549418988 No Hit CGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 2378 0.3648391976606105 No Hit TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 1838 0.2819909357864602 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG 1729 0.2652678607044557 No Hit GCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 1488 0.22829298827543673 No Hit ACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 1468 0.22522453413194965 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT 1161 0.1781237630294234 No Hit AGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 1067 0.16370202855503427 No Hit TCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 1054 0.16170753336176769 No Hit CGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 1052 0.16140068794741896 No Hit ACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 1009 0.1548035115389218 No Hit CGTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 822 0.12611346529731787 No Hit ATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 795 0.12197105220361035 No Hit TGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 788 0.12089709325338988 No Hit GGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 771 0.11828890723142589 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT 756 0.11598756662381057 No Hit TGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCTTG 746 0.11445333955206706 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC 721 0.11061777187270824 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTT 711 0.10908354480096473 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC 684 0.1049411317072572 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8849421749816659 0.0 2 0.0 0.0 0.0 2.8772894503478095 0.0 3 0.0 0.0 0.0 4.738000042958358 0.0 4 0.0 0.0 0.0 6.011408512505485 0.0 5 0.0 0.0 0.0 11.951935734296418 0.0 6 0.0 0.0 0.0 13.595399773548085 0.0 7 0.0 0.0 0.0 19.116315891217162 0.0 8 0.0 0.0 0.0 25.599499228283783 0.0 9 0.0 0.0 0.0 30.72335737978564 0.0 10 0.0 0.0 0.0 33.375115450587145 0.0 11 0.0 0.0 0.0 35.73966621355827 0.0 12 0.0 0.0 0.0 37.45124993479535 0.0 13 0.0 0.0 0.0 38.123548237633365 0.0 14 0.0 0.0 0.0 38.58228213208468 0.0 15 0.0 0.0 0.0 40.058822265930644 0.0 16 0.0 0.0 0.0 41.812443808933494 0.0 17 0.0 0.0 0.0 44.031856690917685 0.0 18 0.0 0.0 0.0 44.94809709816292 0.0 19 0.0 0.0 0.0 46.09738659760599 0.0 20 1.5342270717435264E-4 0.0 0.0 47.13084195313243 0.0 21 4.602681215230579E-4 0.0 0.0 48.09019414109366 0.0 22 0.0010739589502204684 0.0 0.0 49.08514039711933 0.0 23 0.0010739589502204684 0.0 0.0 49.790117736585486 0.0 24 0.004295835800881873 0.0 0.0 50.400586688432234 0.0 25 0.004295835800881873 0.0 0.0 50.91946228409589 0.0 26 0.004295835800881873 0.0 0.0 51.50139461240821 0.0 27 0.004449258508056227 0.0 0.0 52.01229222729881 0.0 28 0.005216372043927989 0.0 0.0 52.52840621423333 0.0 29 0.005216372043927989 0.0 0.0 53.18704989613283 0.0 30 0.005216372043927989 0.0 0.0 53.74520170483312 0.0 31 0.005216372043927989 0.0 0.0 54.2011739905553 0.0 32 0.005216372043927989 0.0 0.0 54.64901487279723 0.0 33 0.005216372043927989 0.0 0.0 55.10176528166875 0.0 34 0.005369794751102342 0.0 0.0 55.653319913960544 0.0 35 0.005369794751102342 0.0 0.0 56.08750617526396 0.0 36 0.005369794751102342 0.0 0.0 56.47566562441508 0.0 37 0.005369794751102342 0.0 0.0 56.890520624614524 0.0 38 0.005369794751102342 0.0 0.0 57.308444078957464 0.0 39 0.005369794751102342 0.0 0.0 57.70887734468252 0.0 40 0.005369794751102342 0.0 0.0 58.102560011291914 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCC 35 1.01865226E-7 46.000004 16 ACCGGCC 35 1.01865226E-7 46.000004 20 GGTCGAG 35 1.01865226E-7 46.000004 7 ATTCGCC 35 1.01865226E-7 46.000004 13 GTTACGG 70 0.0 46.000004 1 ACGGCCA 35 1.01865226E-7 46.000004 6 GTCAAGG 70 0.0 46.000004 1 GATGCGT 35 1.01865226E-7 46.000004 25 TCACTGG 70 0.0 46.000004 1 AGTTCCG 35 1.01865226E-7 46.000004 23 GGCCTTA 35 1.01865226E-7 46.000004 23 AGTACGG 70 0.0 46.000004 1 TTTAGAG 30 1.860155E-6 46.0 31 TAGAGTA 30 1.860155E-6 46.0 33 GTGCAAC 45 3.092282E-10 46.0 33 ACTATTC 20 6.309433E-4 46.0 46 AACCGTA 45 3.092282E-10 46.0 37 TCCATTG 25 3.4155153E-5 46.0 11 ACAGTAC 65 0.0 46.0 22 ACTGCGG 90 0.0 46.0 1 >>END_MODULE