##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043227_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 645089 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21144834278681 33.0 31.0 34.0 30.0 34.0 2 32.48312558422171 34.0 31.0 34.0 31.0 34.0 3 32.542776268080836 34.0 31.0 34.0 31.0 34.0 4 36.11486322042385 37.0 35.0 37.0 35.0 37.0 5 36.06538632653789 37.0 35.0 37.0 35.0 37.0 6 36.295188725896736 37.0 37.0 37.0 35.0 37.0 7 36.20920369127361 37.0 37.0 37.0 35.0 37.0 8 36.13668811590339 37.0 37.0 37.0 35.0 37.0 9 37.74305870972842 39.0 38.0 39.0 35.0 39.0 10 37.59795935134532 39.0 37.0 39.0 35.0 39.0 11 37.29628624887419 39.0 37.0 39.0 35.0 39.0 12 37.24880442853622 39.0 37.0 39.0 34.0 39.0 13 37.26560831141129 39.0 37.0 39.0 34.0 39.0 14 38.69008927450321 40.0 38.0 41.0 35.0 41.0 15 38.7891577751287 40.0 38.0 41.0 35.0 41.0 16 38.82077821819935 40.0 38.0 41.0 35.0 41.0 17 38.79441131378771 40.0 38.0 41.0 35.0 41.0 18 38.5684657465869 40.0 38.0 41.0 35.0 41.0 19 38.31643075606622 40.0 37.0 41.0 35.0 41.0 20 38.0491994127942 40.0 35.0 41.0 35.0 41.0 21 38.01009318094093 40.0 35.0 41.0 35.0 41.0 22 37.96345000457301 40.0 35.0 41.0 34.0 41.0 23 37.94501378879504 40.0 35.0 41.0 34.0 41.0 24 37.85431002543835 40.0 35.0 41.0 34.0 41.0 25 37.83647992757589 40.0 35.0 41.0 34.0 41.0 26 37.830703980381 40.0 35.0 41.0 34.0 41.0 27 37.82561010961278 40.0 35.0 41.0 34.0 41.0 28 37.755987158361094 40.0 35.0 41.0 34.0 41.0 29 37.755573261984004 40.0 35.0 41.0 34.0 41.0 30 37.65264637902677 40.0 35.0 41.0 34.0 41.0 31 37.489754126949926 40.0 35.0 41.0 34.0 41.0 32 37.354802205587134 40.0 35.0 41.0 33.0 41.0 33 37.10693098161649 40.0 35.0 41.0 33.0 41.0 34 36.814131073386775 39.0 35.0 41.0 33.0 41.0 35 36.66287132473194 39.0 35.0 41.0 32.0 41.0 36 36.57652819998481 39.0 35.0 41.0 32.0 41.0 37 36.38446942979961 39.0 35.0 41.0 31.0 41.0 38 36.364968244691816 39.0 35.0 41.0 31.0 41.0 39 36.24571493235817 39.0 35.0 41.0 31.0 41.0 40 36.167914814855 39.0 35.0 40.0 31.0 41.0 41 36.114455524741544 38.0 35.0 40.0 31.0 41.0 42 36.09140444186771 39.0 35.0 40.0 31.0 41.0 43 35.98699249250878 38.0 35.0 40.0 30.0 41.0 44 35.91162149718876 38.0 35.0 40.0 30.0 41.0 45 35.903142047066375 38.0 35.0 40.0 30.0 41.0 46 35.85368840578587 38.0 35.0 40.0 30.0 41.0 47 35.715952372463335 38.0 35.0 40.0 30.0 41.0 48 35.712104841347475 38.0 35.0 40.0 30.0 41.0 49 35.648417505181456 38.0 35.0 40.0 30.0 41.0 50 35.56786117884509 38.0 35.0 40.0 29.0 41.0 51 35.11934942310286 38.0 35.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 0.0 15 4.0 16 13.0 17 32.0 18 78.0 19 141.0 20 324.0 21 590.0 22 873.0 23 1437.0 24 2733.0 25 4996.0 26 7605.0 27 8826.0 28 8438.0 29 8099.0 30 9182.0 31 10926.0 32 13983.0 33 18669.0 34 35630.0 35 72821.0 36 65041.0 37 48080.0 38 81646.0 39 244840.0 40 80.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.185551141005348 19.277340025949908 24.268589295430555 29.26851953761419 2 33.02086998848221 19.740686943972072 26.788706674582883 20.44973639296283 3 21.424175578873612 21.91821593609564 37.5611737295164 19.096434755514355 4 23.32096811447723 24.66899916135603 34.56251773011166 17.447514994055084 5 19.958021296286248 29.333161780777534 30.746765175037865 19.96205174789835 6 71.6848372860179 1.4999480691811518 22.245147568785082 4.570067076015868 7 71.4893603828309 1.4779356026842807 18.06432910807656 8.968374906408263 8 58.08221811253951 2.7411721483392215 28.241219428636978 10.93539031048429 9 32.82601315477399 18.889331549600133 29.817436043708696 18.46721925191718 10 26.411704431481546 17.181660205025974 44.29419816490437 12.112437198588102 11 23.67533782160291 14.294306677063165 40.40233208130971 21.628023420024213 12 15.842310130850162 21.858999300871663 44.43619407554616 17.86249649273201 13 10.91461798294499 25.660335240563704 42.92167437361356 20.503372402877744 14 8.785144375427265 22.078813931100978 48.75838837741769 20.377653316054065 15 8.594783045440241 18.016738775579803 51.6624837813077 21.72599439767226 16 9.466445715242394 24.493054446750758 40.6190463641451 25.421453473861742 17 12.062831640285294 22.25057317672445 42.90896294929847 22.777632233691786 18 13.981481625016082 29.697142564824386 39.93960523276633 16.381770577393198 19 14.429326806068621 23.6218568290577 36.574023119290516 25.374793245583167 20 11.060024275720094 31.9562106934082 35.033150464509546 21.950614566362162 21 12.586945367228397 24.700777722143766 35.30489591358712 27.40738099704072 22 10.248973397469188 28.462274197823866 31.254292043423465 30.034460361283482 23 9.895068742452592 23.54977375214893 43.77132457691884 22.783832928479637 24 15.590096870354323 21.740566030423707 39.62523000702229 23.04410709219968 25 11.083276881174536 25.561899210806573 39.66258919311909 23.692234714899804 26 14.22795924283316 22.27475588639707 37.96592408179337 25.531360788976404 27 20.9420715591182 22.005800749974032 40.12485098955338 16.927276701354387 28 15.235417128489248 21.67189333564826 35.30319072252046 27.789498813342036 29 16.554459927234845 21.917440849247157 37.11425865268203 24.413840570835962 30 24.690391558374117 22.126094228858342 28.9727463962337 24.210767816533842 31 18.94854818482411 21.799317613538598 37.07674444921554 22.175389752421758 32 19.434372621452233 22.408070824335866 33.06194959145172 25.095606962760176 33 18.632002715904317 24.228129761939826 37.62349071213429 19.516376810021562 34 17.578969723557524 22.750969246104024 36.64455602250232 23.025505007836127 35 17.650122696248115 27.625180401463982 33.25262095617814 21.47207594610976 36 20.643818139822567 29.923467924580947 29.78162703130886 19.651086904287627 37 15.551652562669647 34.57181877229343 33.210921283729846 16.665607381307076 38 17.69321752502368 31.371175140174458 28.975846743627624 21.95976059117424 39 25.358671439134756 25.250779349826146 32.214314613952496 17.176234597086605 40 18.700830428049464 20.193337663485195 38.42694573927009 22.67888616919526 41 21.35426274514059 22.94629113192133 32.209199040752516 23.490247082185558 42 22.336607816905886 16.734745128191612 37.67650665257042 23.25214040233208 43 24.21293805970959 20.798990526888538 35.4723146728591 19.515756740542777 44 15.081639897750543 25.60390891799426 35.51711469270132 23.797336491553878 45 19.15859672076256 23.91918014413515 34.46842218670602 22.453800948396268 46 24.621873880968362 19.75990909781441 33.36981408766852 22.248402933548704 47 18.261511202330222 17.845599599435115 37.793699784060806 26.099189414173857 48 19.940039281401482 15.089390766235356 32.44839084219387 32.5221791101693 49 20.620720551737822 16.252176056327112 39.07057785824902 24.05652553368605 50 19.007144750569303 15.820917733832077 39.08297924782472 26.088958267773904 51 16.06925556008551 14.788192016915493 38.581033004748186 30.561519418250814 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 238.0 1 957.0 2 1676.0 3 23088.5 4 44501.0 5 24209.0 6 3917.0 7 3790.0 8 3663.0 9 3877.5 10 4092.0 11 4166.5 12 4241.0 13 4154.5 14 4068.0 15 3736.5 16 3405.0 17 3121.5 18 2838.0 19 2570.0 20 2302.0 21 2202.5 22 2103.0 23 1990.5 24 1878.0 25 1933.5 26 2273.0 27 2557.0 28 2536.0 29 2515.0 30 3214.5 31 3914.0 32 4787.5 33 5661.0 34 6103.5 35 6546.0 36 7508.5 37 8471.0 38 10878.5 39 13286.0 40 18261.5 41 23237.0 42 31928.0 43 40619.0 44 60058.5 45 79498.0 46 100719.0 47 121940.0 48 116831.0 49 111722.0 50 85247.5 51 58773.0 52 44676.5 53 30580.0 54 24039.0 55 17498.0 56 13875.0 57 10252.0 58 9010.5 59 7769.0 60 6617.0 61 5465.0 62 4596.5 63 3728.0 64 3177.0 65 2626.0 66 2246.0 67 1866.0 68 1653.5 69 1441.0 70 1232.5 71 1024.0 72 1080.5 73 1137.0 74 978.5 75 736.0 76 652.0 77 501.5 78 351.0 79 261.5 80 172.0 81 101.5 82 31.0 83 25.0 84 19.0 85 10.0 86 1.0 87 2.5 88 4.0 89 3.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 645089.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.32396363583549 #Duplication Level Percentage of deduplicated Percentage of total 1 72.5112548235613 20.53806144811351 2 11.728444465778155 6.643920691072329 3 4.7366618139714864 4.024831109225368 4 2.4447592287529107 2.7698108597428264 5 1.4514449132136482 2.0555336470640886 6 0.9823526121236572 1.669447179801508 7 0.675211520552497 1.3387266588238278 8 0.5094933200582134 1.1544696216023944 9 0.3993451676185331 1.0179934205196564 >10 3.7750124902455573 23.731120754425195 >50 0.5260370230689732 10.10020351803359 >100 0.24507915870159744 12.376239659010457 >500 0.007175741133154881 1.4324112600378192 >1k 0.00607178095882336 2.845279690179903 >5k 0.00110396017433152 1.7540080688020403 >10k+ 5.5198008716576E-4 6.547942413545507 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41882 6.492437477619367 No Hit CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 5745 0.8905747889050969 No Hit CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 5474 0.8485650817174064 No Hit GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 3813 0.5910812306518946 No Hit CGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 2490 0.3859932505437234 No Hit TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 1809 0.2804264217805605 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC 1682 0.2607392158291337 No Hit ACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 1563 0.242292148835277 No Hit GCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 1533 0.23764162774438874 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC 1114 0.17268934984164974 No Hit CGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT 1076 0.16679868979319132 No Hit ACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 1072 0.16617862031440622 No Hit AGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 1042 0.16152809922351802 No Hit TCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 1005 0.15579245654475585 No Hit TGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCTT 916 0.14199591064178743 Illumina Single End Adapter 1 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 867 0.13440005952666995 No Hit CGTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT 825 0.12788932999942643 No Hit ATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 743 0.11517790568433192 No Hit GGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG 738 0.11440281883585054 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTC 728 0.1128526451388878 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT 703 0.10897721089648095 No Hit ATAGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC 657 0.10184641189045233 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8722827392809365 0.0 2 0.0 0.0 0.0 2.8512344808235763 0.0 3 0.0 0.0 0.0 4.771589656621025 0.0 4 0.0 0.0 0.0 6.051878112942555 0.0 5 0.0 0.0 0.0 12.0501202159702 0.0 6 0.0 0.0 0.0 13.705550706956714 0.0 7 0.0 0.0 0.0 19.329580879537552 0.0 8 0.0 0.0 0.0 25.984011508489527 0.0 9 0.0 0.0 0.0 31.323894842417094 0.0 10 0.0 0.0 0.0 34.04723999324124 0.0 11 0.0 0.0 0.0 36.499149729727215 0.0 12 0.0 0.0 0.0 38.2809193770162 0.0 13 0.0 0.0 0.0 38.95679510889195 0.0 14 0.0 0.0 0.0 39.44292958025947 0.0 15 0.0 0.0 0.0 40.95961952536782 0.0 16 0.0 0.0 0.0 42.71426113295995 0.0 17 0.0 0.0 0.0 45.022469767737476 0.0 18 0.0 0.0 0.0 45.97985704298166 0.0 19 0.0 0.0 0.0 47.130085926128025 0.0 20 0.0 0.0 0.0 48.17226770259607 0.0 21 3.100347393925489E-4 0.0 0.0 49.18747645673698 0.0 22 4.650521090888234E-4 0.0 0.0 50.20377033246575 0.0 23 4.650521090888234E-4 0.0 0.0 50.92723639683827 0.0 24 0.0038754342424068616 0.0 0.0 51.55071625775668 0.0 25 0.0038754342424068616 0.0 0.0 52.08103067948764 0.0 26 0.0038754342424068616 0.0 0.0 52.67242194487893 0.0 27 0.0038754342424068616 0.0 0.0 53.191265081252354 0.0 28 0.00449550372119196 0.0 0.0 53.69135111589254 0.0 29 0.00449550372119196 0.0 0.0 54.344904346532026 0.0 30 0.00449550372119196 0.0 0.0 54.8952160089538 0.0 31 0.00449550372119196 0.0 0.0 55.365383691242606 0.0 32 0.00449550372119196 0.0 0.0 55.83694652985867 0.0 33 0.00449550372119196 0.0 0.0 56.28432665880212 0.0 34 0.00449550372119196 0.0 0.0 56.83169299119967 0.0 35 0.00449550372119196 0.0 0.0 57.27767796381585 0.0 36 0.00449550372119196 0.0 0.0 57.69777503569275 0.0 37 0.00449550372119196 0.0 0.0 58.10407556166668 0.0 38 0.00449550372119196 0.0 0.0 58.52339754669511 0.0 39 0.00449550372119196 0.0 0.0 58.924272464729675 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTTTA 20 7.0309814E-4 45.000004 32 CTTCGCT 20 7.0309814E-4 45.000004 2 TAGAGTA 30 2.1640153E-6 45.000004 33 AACCGTA 25 3.888895E-5 45.000004 37 TTGGCTA 20 7.0309814E-4 45.000004 19 CGGAACA 30 2.1640153E-6 45.000004 27 AACCGCG 25 3.888895E-5 45.000004 19 CTGTCGG 25 3.888895E-5 45.000004 1 TCGTTGA 20 7.0309814E-4 45.000004 23 CTCACGG 50 2.1827873E-11 45.000004 1 GGTACGA 20 7.0309814E-4 45.000004 7 GTACCGG 25 3.888895E-5 45.000004 1 TCGCAGG 65 0.0 45.000004 1 ACACGAC 30 2.1640153E-6 45.000004 25 ACTGCAC 20 7.0309814E-4 45.000004 21 GGTAATC 25 3.888895E-5 45.000004 7 TTAATCG 20 7.0309814E-4 45.000004 19 CGCGGGT 30 2.1640153E-6 45.000004 3 GACACGA 30 2.1640153E-6 45.000004 24 TAGACAG 25 3.888895E-5 45.000004 42 >>END_MODULE