SRR1043223_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043223_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1138526
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83745	7.355563245810812	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	6788	0.5962094848953823	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	6367	0.5592318488993664	No Hit
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	4664	0.4096524804879291	No Hit
CGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTG	4450	0.390856247463826	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC	3177	0.2790450108297922	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT	2821	0.2477765110326861	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC	2453	0.2154540168603967	No Hit
TCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	2343	0.2057924017545493	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT	2292	0.20131292566002004	No Hit
CGTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCT	1899	0.16679460987276531	No Hit
ACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTG	1806	0.15862615346509434	No Hit
GCCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTG	1669	0.1465930510150844	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTC	1564	0.13737060023223008	No Hit
AGCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTG	1383	0.12147285173988122	No Hit
ACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1273	0.11181123663403383	No Hit
TCCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTG	1199	0.10531160465373648	No Hit
TGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCTT	1151	0.1010956271530031	Illumina Single End Adapter 2 (95% over 21bp)

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCA	20	7.0332567E-4	45.000004	11
TCGATAT	20	7.0332567E-4	45.000004	24
GCGCAAA	20	7.0332567E-4	45.000004	13
GCCGATA	30	2.1654832E-6	45.000004	8
CCGTACG	20	7.0332567E-4	45.000004	13
CGCTCGA	20	7.0332567E-4	45.000004	27
ACAGCGC	20	7.0332567E-4	45.000004	10
GCGATTG	120	0.0	45.000004	8
CGGTCTA	95	0.0	45.000004	30
CACCGTC	20	7.0332567E-4	45.000004	10
CTCTCGA	20	7.0332567E-4	45.000004	19
TAGTCCG	20	7.0332567E-4	45.000004	43
CCGCACT	80	0.0	45.000004	33
TGGTCGG	20	7.0332567E-4	45.000004	1
TGCCGCG	20	7.0332567E-4	45.000004	1
ACGGTCC	20	7.0332567E-4	45.000004	15
GCGCGAC	70	0.0	45.0	8
CCTACGG	25	3.8907827E-5	45.0	1
GCCGATT	25	3.8907827E-5	45.0	8
CGCAGTA	35	1.2119199E-7	45.0	36

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content