SRR1043219_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043219_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1364036
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	60168	4.411027274939958	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	6854	0.502479406701876	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	6054	0.4438299282423631	Illumina Single End Adapter 1 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5610	0.41127946769733353	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	5597	0.41032641367236644	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3534	0.2590840710948978	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	2686	0.1969156239278142	No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	2374	0.17404232732860422	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCC	2265	0.16605133588849563	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2138	0.15674073118304793	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2099	0.1538815691081467	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2049	0.15021597670442716	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	1911	0.1400989416701612	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	1813	0.1329143805588709	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG	1811	0.1327677568627221	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1769	0.12968865924359768	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1446	0.10600893231556938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	30	2.1658016E-6	45.000004	20
TTGCGTA	20	7.03375E-4	45.000004	36
TTAACGG	90	0.0	45.000004	1
CGTAAGA	20	7.03375E-4	45.000004	39
AATACGG	30	2.1658016E-6	45.000004	1
TACCGAA	30	2.1658016E-6	45.000004	8
GTCATAG	25	3.8911898E-5	45.0	27
CATGCGG	215	0.0	45.0	1
ACGGGTA	155	0.0	45.0	4
TCATGCG	25	3.8911898E-5	45.0	33
ATAACGG	50	2.1827873E-11	45.0	1
CGGTCTA	520	0.0	44.567307	30
CGTTTTT	13310	0.0	44.2731	1
CGACGGT	555	0.0	43.783783	27
TAGTAGG	330	0.0	43.636364	1
CACGACG	550	0.0	43.363636	25
TCACGAC	590	0.0	43.09322	24
ACGGTCT	550	0.0	42.954544	29
ACGTAGG	105	0.0	42.857143	1
ACGGGAT	305	0.0	42.786884	4