##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043218_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2235388 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40580471935968 33.0 31.0 34.0 31.0 34.0 2 32.74033366914379 34.0 31.0 34.0 31.0 34.0 3 32.856026336367556 34.0 31.0 34.0 31.0 34.0 4 36.275467614570715 37.0 37.0 37.0 35.0 37.0 5 36.22119739391998 37.0 37.0 37.0 35.0 37.0 6 36.349007867985335 37.0 37.0 37.0 35.0 37.0 7 36.29315402963602 37.0 37.0 37.0 35.0 37.0 8 36.285898913298276 37.0 37.0 37.0 35.0 37.0 9 37.88680220167595 39.0 38.0 39.0 35.0 39.0 10 37.71920892480411 39.0 37.0 39.0 35.0 39.0 11 37.42820619955015 39.0 37.0 39.0 35.0 39.0 12 37.435110593776116 39.0 37.0 39.0 35.0 39.0 13 37.42102489590174 39.0 37.0 39.0 35.0 39.0 14 38.806392447306685 41.0 38.0 41.0 35.0 41.0 15 38.8557297435613 41.0 38.0 41.0 35.0 41.0 16 38.753043319549 41.0 38.0 41.0 34.0 41.0 17 38.73483663686125 41.0 38.0 41.0 34.0 41.0 18 38.509925793642985 40.0 38.0 41.0 34.0 41.0 19 38.233970120623354 40.0 37.0 41.0 34.0 41.0 20 37.93283939969258 40.0 35.0 41.0 34.0 41.0 21 37.86347739184428 40.0 35.0 41.0 34.0 41.0 22 37.80079699810503 40.0 35.0 41.0 34.0 41.0 23 37.806683671917355 40.0 35.0 41.0 34.0 41.0 24 37.708216649637556 40.0 35.0 41.0 34.0 41.0 25 37.61205124121629 39.0 35.0 41.0 34.0 41.0 26 37.51970485660655 39.0 35.0 41.0 34.0 41.0 27 37.54873024280349 39.0 35.0 41.0 34.0 41.0 28 37.515100286840585 39.0 35.0 41.0 34.0 41.0 29 37.43439662376286 39.0 35.0 41.0 34.0 41.0 30 37.36996709296104 39.0 35.0 41.0 33.0 41.0 31 37.23891512345955 39.0 35.0 41.0 33.0 41.0 32 36.96462538047086 39.0 35.0 41.0 33.0 41.0 33 36.57078234293107 39.0 35.0 41.0 31.0 41.0 34 36.30253360937788 39.0 35.0 41.0 31.0 41.0 35 36.082414328071906 39.0 35.0 41.0 30.0 41.0 36 36.02051455944113 39.0 35.0 41.0 30.0 41.0 37 35.925856271931316 39.0 35.0 41.0 30.0 41.0 38 35.777002023809736 38.0 35.0 41.0 30.0 41.0 39 35.72751844422534 38.0 35.0 41.0 29.0 41.0 40 35.664524011044165 38.0 35.0 41.0 29.0 41.0 41 35.618043936891496 38.0 35.0 41.0 29.0 41.0 42 35.529153775541424 38.0 35.0 41.0 29.0 41.0 43 35.42284292480768 38.0 35.0 41.0 29.0 41.0 44 35.24745726468962 37.0 35.0 40.0 27.0 41.0 45 35.15293049797172 37.0 35.0 40.0 27.0 41.0 46 35.11116146279751 37.0 35.0 40.0 26.0 41.0 47 35.022777701231284 37.0 35.0 40.0 26.0 41.0 48 34.93521572093972 36.0 35.0 40.0 26.0 41.0 49 34.88442364368065 36.0 35.0 40.0 27.0 41.0 50 34.79027578210136 36.0 35.0 40.0 27.0 41.0 51 34.65300788945812 36.0 35.0 40.0 26.0 41.0 52 34.27923027232856 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 3.0 13 6.0 14 14.0 15 48.0 16 88.0 17 170.0 18 403.0 19 804.0 20 1585.0 21 2588.0 22 3973.0 23 6585.0 24 11849.0 25 21042.0 26 31913.0 27 38389.0 28 39133.0 29 37636.0 30 37430.0 31 41171.0 32 48372.0 33 64184.0 34 144458.0 35 211946.0 36 216099.0 37 214553.0 38 317114.0 39 741952.0 40 1879.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.654533351704494 16.531134639713553 23.550005636605366 31.264326371976587 2 36.376235356009786 19.385046354368907 23.40551170535048 20.83320658427083 3 25.194597090080112 20.701417382575197 34.787517871617816 19.31646765572688 4 22.62287352352254 23.35071137538539 32.972128328504944 21.05428677258713 5 21.308560303625143 30.57522899827681 29.57218165258112 18.54402904551693 6 76.70645990763126 2.0089129940753017 18.373767775437642 2.9108593228558086 7 76.51432324052917 1.9125091482999816 17.033284602046713 4.539883009124143 8 67.88799080964915 3.3162922946709923 22.02221717214193 6.7734997235379275 9 40.87133866693388 15.166405116248274 26.664766921894547 17.297489294923295 10 27.039198564186616 16.233244519519655 35.93479073878897 20.792766177504753 11 23.967427578568014 13.121212066987923 41.07027504844796 21.841085305996096 12 20.057323381891646 14.308791136035445 43.08558514226613 22.548300339806783 13 16.129235729994075 17.34007697992474 44.57557256279447 21.955114727286716 14 16.402611090334208 17.345310970623444 44.224492571312005 22.027585367730346 15 20.128541443364643 14.323106324271222 43.42552612790263 22.122826104461506 16 19.488294649519457 18.2689537565738 39.198653656546426 23.044097937360313 17 19.984763271521544 19.515717181983618 38.528344967406106 21.971174579088732 18 20.92509219875923 24.43123967740723 35.0247473816626 19.618920742170936 19 21.6303388941875 20.785921728129527 34.30715383638098 23.276585541302 20 21.55263426304516 24.24044505920225 34.79306500705918 19.41385567069341 21 19.24498118447446 19.486907865659116 35.89757124937595 25.370539700490475 22 20.611723781285395 21.12756264236902 34.38159281520702 23.87912076113856 23 21.289816354028922 19.476216209445518 36.991072690736466 22.242894745789098 24 23.41629283149055 17.825719740823516 34.41478615792873 24.3432012697572 25 18.54291067143601 18.973350487700568 36.95492684044112 25.528812000422295 26 18.185523050137157 18.540316043568275 37.062872306731535 26.211288599563026 27 21.547042392640563 20.722174405517073 36.092347279309 21.638435922533358 28 22.076883297217307 21.45699091164487 32.389187022566105 24.076938768571722 29 21.525435405397182 18.667989628646122 36.33525812968487 23.471316836271825 30 24.245231700268587 20.944909787473136 31.59518616007601 23.214672352182262 31 25.421492823617196 18.973976777185886 31.505224149006793 24.09930625019012 32 23.283608930530182 19.89260924725372 31.46353116327009 25.36025065894601 33 18.761619906700762 23.601898193960064 34.41330990414192 23.22317199519725 34 21.083006618985163 22.89817248728185 31.44134262150463 24.577478272228355 35 21.157714007590627 25.120426521033483 30.520249728458772 23.20160974291711 36 23.341988057554214 25.904630426574716 27.87395297818544 22.879428537685627 37 23.186489325343075 25.634789128330294 30.535906965591657 20.642814580734978 38 22.072365065930388 23.032153702176085 29.825157869685263 25.070323362208264 39 22.776180242535077 21.618976213525347 34.324421532190385 21.28042201174919 40 18.91837121788253 22.072275596003916 35.52832886281934 23.48102432329421 41 20.376373139696554 23.909093186507217 31.466170526101063 24.248363147695166 42 19.91027955773226 19.42087905992159 33.075331888692254 27.5935094936539 43 22.162148137146662 20.72781101088491 33.26022149174998 23.84981936021845 44 22.08077523901891 21.286327026896448 33.05860101244169 23.574296721642956 45 22.220929878839826 21.567038921207416 32.51775530690869 23.694275893044072 46 22.482361003995727 20.249057434324598 32.78862550930756 24.479956052372113 47 20.10335565906232 21.684736609483455 34.26617661005606 23.945731121398165 48 21.11566314214803 20.46105642510383 31.51497637099242 26.90830406175572 49 20.304931403407373 18.492852247574024 35.523497486789765 25.678718862228838 50 20.058754900715222 18.66790015871965 36.14151100390626 25.13183393665887 51 19.071812141784783 17.529171669526722 36.015671552321116 27.38334463636738 52 17.532705731622432 18.679307574345035 38.407784241482915 25.38020245254963 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 632.0 1 3554.0 2 6476.0 3 76050.5 4 145625.0 5 83172.5 6 20720.0 7 19048.0 8 17376.0 9 17113.5 10 16851.0 11 16341.5 12 15832.0 13 15117.0 14 13475.5 15 12549.0 16 11702.5 17 10856.0 18 9992.5 19 9129.0 20 8761.0 21 8393.0 22 8068.0 23 7743.0 24 7760.0 25 7777.0 26 8465.0 27 9153.0 28 9462.5 29 9772.0 30 10905.0 31 12038.0 32 14004.5 33 15971.0 34 18446.0 35 20921.0 36 23954.0 37 26987.0 38 28885.5 39 35035.5 40 39287.0 41 49936.5 42 60586.0 43 83077.0 44 105568.0 45 135964.0 46 166360.0 47 182730.0 48 199100.0 49 194389.0 50 189678.0 51 171305.0 52 152932.0 53 136777.5 54 120623.0 55 115448.0 56 110273.0 57 109728.0 58 109183.0 59 107628.0 60 106073.0 61 105870.5 62 105668.0 63 105808.5 64 90596.5 65 75244.0 66 63439.5 67 51635.0 68 43018.5 69 34402.0 70 30238.0 71 26074.0 72 25358.5 73 24643.0 74 19783.0 75 14923.0 76 11877.0 77 8831.0 78 6546.0 79 4261.0 80 3270.5 81 2280.0 82 1642.0 83 1004.0 84 691.0 85 378.0 86 311.5 87 245.0 88 169.5 89 79.0 90 64.0 91 46.0 92 28.0 93 18.5 94 9.0 95 6.0 96 3.0 97 2.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2235388.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.306627506684052 #Duplication Level Percentage of deduplicated Percentage of total 1 75.01251796986345 21.983639224812322 2 9.88534604908787 5.794123088705782 3 3.507945251380836 3.0841813438817796 4 1.7183900853328038 2.0144087256811005 5 1.121408439341708 1.6432349707319667 6 0.8380028843183627 1.473542302814706 7 0.6582497855131991 1.3503756889273 8 0.537607794183961 1.2604377095071528 9 0.4642390370351762 1.2244752479206449 >10 5.791429975322485 36.623449963486124 >50 0.3246381886078311 6.2919555707883115 >100 0.12917874254205158 6.568363378122187 >500 0.005522898735102449 1.1046776831098009 >1k 0.004602415612585374 2.616247227519711 >5k 4.602415612585374E-4 0.8854056822743714 >10k+ 4.602415612585374E-4 6.081482191716767 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 110748 4.954307708549925 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 14228 0.636489056933293 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 10287 0.46018856681703574 No Hit CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT 7969 0.3564929220341167 TruSeq Adapter, Index 21 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCTT 6287 0.28124871386980693 TruSeq Adapter, Index 15 (96% over 25bp) CGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC 5437 0.2432239951185208 TruSeq Adapter, Index 15 (95% over 23bp) CGTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT 4148 0.18556062750627633 TruSeq Adapter, Index 15 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT 3758 0.1681139918439215 TruSeq Adapter, Index 21 (95% over 22bp) CGTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC 3693 0.16520621923352904 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3418 0.15290410434340704 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3323 0.14865428283591037 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT 2768 0.12382637823948237 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCG 2766 0.12373690831300875 No Hit CGTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG 2369 0.10597712790799628 TruSeq Adapter, Index 15 (95% over 22bp) AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2341 0.10472454893736569 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2901062365906948 0.0 2 0.0 0.0 0.0 0.9445787487451843 0.0 3 0.0 0.0 0.0 1.6220897669666294 0.0 4 0.0 0.0 0.0 2.088317553820634 0.0 5 0.0 0.0 0.0 4.324797305881574 0.0 6 0.0 0.0 0.0 5.230098756904842 0.0 7 0.0 0.0 0.0 7.610222475919169 0.0 8 0.0 0.0 0.0 10.242830327442038 0.0 9 0.0 0.0 0.0 12.829942721353072 0.0 10 0.0 0.0 0.0 14.201471959230345 0.0 11 0.0 0.0 0.0 15.30154944018667 0.0 12 0.0 0.0 0.0 16.08083249977185 0.0 13 0.0 0.0 0.0 16.495122994307923 0.0 14 0.0 0.0 0.0 16.754719985971114 0.0 15 0.0 0.0 0.0 17.385930317242465 0.0 16 4.4734963236807213E-5 0.0 0.0 18.10115290947254 0.0 17 4.4734963236807213E-5 0.0 0.0 19.002965033363335 0.0 18 1.3420488971042165E-4 0.0 0.0 19.51974332867493 0.0 19 1.7893985294722885E-4 0.0 0.0 20.10460823803295 0.0 20 1.7893985294722885E-4 0.0 0.0 20.725082178127465 0.0 21 1.7893985294722885E-4 0.0 0.0 21.372844445796435 0.0 22 2.2367481618403606E-4 0.0 0.0 21.991976336993847 0.0 23 2.2367481618403606E-4 0.0 0.0 22.511975549658494 0.0 24 2.684097794208433E-4 0.0 0.0 22.959593591805987 0.0 25 3.578797058944577E-4 0.0 0.0 23.396072628107515 0.0 26 4.026146691312649E-4 0.0 0.0 23.836309401320936 0.0 27 4.026146691312649E-4 0.0 0.0 24.291845531961343 0.0 28 4.473496323680721E-4 0.0 0.0 24.736779476314627 0.0 29 4.473496323680721E-4 0.0 0.0 25.192136667102087 0.0 30 4.473496323680721E-4 0.0 0.0 25.63568382759503 0.0 31 4.473496323680721E-4 0.0 0.0 26.06088965316088 0.0 32 4.473496323680721E-4 0.0 0.0 26.533469804794514 0.0 33 4.473496323680721E-4 0.0 0.0 27.001621195067703 0.0 34 4.473496323680721E-4 0.0 0.0 27.50887094320986 0.0 35 4.473496323680721E-4 0.0 0.0 27.941905387342153 0.0 36 4.473496323680721E-4 0.0 0.0 28.3940863957398 0.0 37 4.473496323680721E-4 0.0 0.0 28.95157350759689 0.0 38 4.473496323680721E-4 0.0 0.0 29.557240174860024 0.0 39 4.473496323680721E-4 0.0 0.0 30.19046357947703 0.0 40 4.473496323680721E-4 0.0 0.0 30.779980925011674 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGAA 20 6.3127413E-4 46.0 8 CGTTTTT 28195 0.0 45.265827 1 AATACGG 135 0.0 44.2963 1 TACGGGT 180 0.0 43.444447 3 TATACGG 115 0.0 42.0 1 CGGTCTA 345 0.0 41.999996 30 CACTTAC 3730 0.0 41.621983 36 AGCACGG 365 0.0 41.58904 1 CACGACG 360 0.0 41.52778 25 CTTACTG 3720 0.0 41.177418 38 CGCACTT 3785 0.0 40.89564 34 ACGCATA 45 1.5896148E-8 40.88889 23 GTTTTTT 31960 0.0 40.854504 2 CCGCACT 3790 0.0 40.84169 33 ACTTACT 3785 0.0 40.71334 37 GCACTTA 3815 0.0 40.694626 35 TCTACGG 170 0.0 40.588234 1 CGTTCAG 1400 0.0 40.57857 38 GTACGGG 505 0.0 40.534653 2 ACCCGCA 3865 0.0 40.346703 31 >>END_MODULE