##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043217_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2201980 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.39043451802468 33.0 31.0 34.0 31.0 34.0 2 32.69100990926348 34.0 31.0 34.0 31.0 34.0 3 32.782708743948625 34.0 31.0 34.0 31.0 34.0 4 36.25517670460222 37.0 37.0 37.0 35.0 37.0 5 36.244779244134826 37.0 37.0 37.0 35.0 37.0 6 36.3735901325171 37.0 37.0 37.0 35.0 37.0 7 36.331240065759 37.0 37.0 37.0 35.0 37.0 8 36.246901879217795 37.0 37.0 37.0 35.0 37.0 9 37.854707127221864 39.0 38.0 39.0 35.0 39.0 10 37.671727717781266 39.0 37.0 39.0 35.0 39.0 11 37.42660560041417 39.0 37.0 39.0 35.0 39.0 12 37.44279375834476 39.0 37.0 39.0 35.0 39.0 13 37.43787636581622 39.0 37.0 39.0 35.0 39.0 14 38.81994023560614 41.0 38.0 41.0 35.0 41.0 15 38.87931498015423 41.0 38.0 41.0 35.0 41.0 16 38.810106358822516 41.0 38.0 41.0 35.0 41.0 17 38.76650105813859 41.0 38.0 41.0 34.0 41.0 18 38.56171218630505 40.0 38.0 41.0 35.0 41.0 19 38.312382492120726 40.0 37.0 41.0 35.0 41.0 20 38.034728744130284 40.0 35.0 41.0 34.0 41.0 21 37.96733258249394 40.0 35.0 41.0 34.0 41.0 22 37.91452374680969 40.0 35.0 41.0 34.0 41.0 23 37.8911456961462 40.0 35.0 41.0 34.0 41.0 24 37.795022207286166 40.0 35.0 41.0 34.0 41.0 25 37.75900734793232 40.0 35.0 41.0 34.0 41.0 26 37.72892215188149 40.0 35.0 41.0 34.0 41.0 27 37.70457315688608 40.0 35.0 41.0 34.0 41.0 28 37.61381892660242 39.0 35.0 41.0 34.0 41.0 29 37.565719488823696 39.0 35.0 41.0 34.0 41.0 30 37.45077657381084 40.0 35.0 41.0 34.0 41.0 31 37.31169583738272 39.0 35.0 41.0 33.0 41.0 32 37.04560668125959 39.0 35.0 41.0 33.0 41.0 33 36.641888663838905 39.0 35.0 41.0 32.0 41.0 34 36.342290574846274 39.0 35.0 41.0 31.0 41.0 35 36.126584710124526 39.0 35.0 41.0 30.0 41.0 36 36.04827110146323 39.0 35.0 41.0 30.0 41.0 37 35.91347741578034 39.0 35.0 41.0 30.0 41.0 38 35.76814321655964 38.0 35.0 41.0 30.0 41.0 39 35.685528478914435 38.0 35.0 41.0 29.0 41.0 40 35.60101227077448 38.0 35.0 41.0 29.0 41.0 41 35.51536344562621 38.0 35.0 40.0 29.0 41.0 42 35.4065277613784 38.0 35.0 40.0 29.0 41.0 43 35.28818199983651 37.0 35.0 40.0 28.0 41.0 44 35.17960154043179 37.0 35.0 40.0 27.0 41.0 45 35.11202326996612 37.0 35.0 40.0 27.0 41.0 46 35.01447379176923 37.0 35.0 40.0 26.0 41.0 47 34.87130309993733 36.0 35.0 40.0 26.0 41.0 48 34.80486153371057 36.0 35.0 40.0 26.0 41.0 49 34.745409585918125 36.0 35.0 40.0 26.0 41.0 50 34.680967583720104 36.0 35.0 40.0 26.0 41.0 51 34.2597816510595 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 4.0 13 4.0 14 12.0 15 21.0 16 68.0 17 147.0 18 349.0 19 691.0 20 1361.0 21 2254.0 22 3560.0 23 5691.0 24 9686.0 25 17818.0 26 29259.0 27 37445.0 28 39456.0 29 37761.0 30 37369.0 31 40969.0 32 47682.0 33 61751.0 34 140210.0 35 210930.0 36 206095.0 37 212153.0 38 331732.0 39 727318.0 40 181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.929100173480233 16.585527570640966 23.623012016457913 30.862360239420884 2 36.07966466543747 19.428832232808656 23.433455344735194 21.058047757018684 3 25.275479341320086 20.78052480040691 34.428741405462354 19.51525445281065 4 22.697572185033472 23.504209847500885 32.624138275552006 21.17407969191364 5 21.48280184197858 30.68483819108257 29.248312882042526 18.584047084896323 6 77.02258876102417 2.006421493383228 18.019873023369875 2.951116722222727 7 76.86436752377406 1.8768108702168047 16.6742204743004 4.584601131708735 8 68.19807627680542 3.257068638225597 21.698108066376626 6.8467470185923585 9 41.018855757091345 15.162944259257577 26.339521703194396 17.47867828045668 10 27.279357669006988 16.27784993505845 35.60422892124361 20.83856347469096 11 24.219475199593095 13.081408550486382 40.79296814684965 21.906148103070873 12 20.196323309021878 14.279466661822541 42.86614773976149 22.658062289394092 13 16.230301819271748 17.268049664392958 44.456534573429366 22.04511394290593 14 16.529986648380092 17.371411184479424 43.96402328813159 22.13457887900889 15 20.227522502475047 14.404581331347242 43.1530259130419 22.214870253135814 16 19.622203653075868 18.26969363936094 38.9903178048847 23.117784902678498 17 20.205814766709963 19.43396397787446 38.343536271900746 22.016684983514835 18 20.966766273989773 24.584691959055032 34.83396761096831 19.614574155986887 19 21.717999255215762 20.88751941434527 34.00298821969319 23.391493110745785 20 21.622312645891427 24.452447342845986 34.4341002188939 19.491139792368685 21 19.350266578261383 19.591276941661594 35.63293036267359 25.42552611740343 22 20.720033787772824 21.238794176150556 33.924558806165365 24.116613229911263 23 21.408777554746184 19.49663484681968 36.66173171418451 22.43285588424963 24 23.519060118620512 17.874049718889363 34.120791287840945 24.48609887464918 25 18.511339794185233 18.988274189593003 36.7943850534519 25.70600096276987 26 18.237495345098502 18.47755202136259 36.776083343172964 26.508869290365944 27 21.57458287541213 20.78206886529396 35.85091599378741 21.7924322655065 28 22.225769534691505 21.448196623039266 32.067139574383056 24.258894267886173 29 21.591976312228088 18.67010599551313 36.04306124487961 23.694856447379177 30 24.374789961761685 20.971216813958346 31.26227304516844 23.391720179111527 31 25.590196096240657 18.93514019200901 31.226714139092998 24.247949572657333 32 23.29712349794276 19.845548097621233 31.233798672104196 25.62352973233181 33 18.815838472647346 23.580731886756464 34.1752876956194 23.428141944976794 34 21.181663775329476 22.918736773267696 31.21754057711696 24.682058874285868 35 21.174670069664575 25.14491503101754 30.21930262763513 23.461112271682758 36 23.348804257985993 25.969491094378693 27.626772268594628 23.054932379040682 37 23.339721523356253 25.56576354008665 30.351093107112693 20.743421829444408 38 22.226723221827626 22.959245769716347 29.667798980917176 25.14623202753885 39 22.80007084533011 21.62149519977475 34.23632367233127 21.342110282563876 40 19.056576354008666 22.043887773730912 35.3950081290475 23.50452774321293 41 20.429250038601623 23.80966221309912 31.389794639370024 24.371293108929237 42 20.041508097257925 19.34854085868173 32.96646654374699 27.643484500313352 43 22.337623411656782 20.564264888872742 33.138266469268565 23.95984523020191 44 22.14525109219884 21.17162735356361 32.97214325289058 23.71097830134697 45 22.336306415135468 21.3359794366888 32.54616299875567 23.781551149420068 46 22.66828036585255 20.167894349630785 32.681359503719385 24.482465780797284 47 20.318304435099318 21.455371983396763 34.19903904667617 24.027284534827746 48 21.241246514500585 20.32616100055405 31.345152998664837 27.08743948628053 49 20.471530168303072 18.358659025059264 35.33156522765874 25.83824557897892 50 20.250728889454038 18.47528133770516 36.044014932015735 25.229974840825076 51 19.226060182199657 17.556789798272465 35.714311664956085 27.502838354571796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 567.0 1 3370.5 2 6174.0 3 72201.5 4 138229.0 5 79685.0 6 21141.0 7 19201.0 8 17261.0 9 16755.5 10 16250.0 11 15792.0 12 15334.0 13 14492.0 14 13650.0 15 12760.0 16 11870.0 17 10944.0 18 10018.0 19 9301.5 20 8585.0 21 8221.5 22 7858.0 23 7461.5 24 7065.0 25 7172.5 26 8027.5 27 8775.0 28 9630.5 29 10486.0 30 11365.5 31 12245.0 32 14298.5 33 16352.0 34 19714.5 35 23077.0 36 25962.5 37 28848.0 38 30930.5 39 33013.0 40 39988.5 41 46964.0 42 59082.5 43 71201.0 44 96572.0 45 121943.0 46 155183.0 47 188423.0 48 206882.5 49 225342.0 50 201714.5 51 178087.0 52 152465.5 53 126844.0 54 119248.5 55 111653.0 56 109610.5 57 107568.0 58 108663.5 59 109759.0 60 109026.0 61 108293.0 62 105522.0 63 102751.0 64 98468.0 65 94185.0 66 78177.5 67 62170.0 68 51258.0 69 40346.0 70 35076.5 71 29807.0 72 27223.5 73 24640.0 74 21083.0 75 13894.5 76 10263.0 77 7717.5 78 5172.0 79 3894.5 80 2617.0 81 1955.5 82 1294.0 83 906.5 84 519.0 85 392.0 86 265.0 87 201.0 88 137.0 89 114.0 90 91.0 91 61.0 92 31.0 93 18.5 94 6.0 95 4.5 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2201980.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.048231253667865 #Duplication Level Percentage of deduplicated Percentage of total 1 74.33351641812557 21.592571748120285 2 10.030775165906887 5.827525533456238 3 3.6682015418690463 3.1966430001981925 4 1.8825601997256973 2.1874017612233287 5 1.1729271921957194 1.7035730161308296 6 0.8160513184664742 1.4222908448204823 7 0.6743106079173844 1.371127133290988 8 0.5557411681502478 1.2914638375689533 9 0.4844467185644385 1.2665088279846328 >10 5.9175115213013925 36.824083917277136 >50 0.3177202299416689 6.094499588101038 >100 0.134734605122696 6.745169912224642 >500 0.00583044616946588 1.123387820537652 >1k 0.004727388786053417 2.613151491274284 >5k 6.303185048071223E-4 1.3183396878536762 >10k+ 3.1515925240356113E-4 5.4222618799376034 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 104927 4.765120482474863 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13530 0.6144469977020681 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 8708 0.39546226577898075 No Hit CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC 8120 0.3687590259675383 TruSeq Adapter, Index 21 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT 6388 0.2901025440739698 TruSeq Adapter, Index 15 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG 5585 0.25363536453555435 TruSeq Adapter, Index 15 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC 4132 0.1876492974504764 No Hit GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC 3828 0.17384354081326805 TruSeq Adapter, Index 21 (95% over 21bp) CGTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT 3702 0.1681214179965304 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3367 0.152907837491712 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3184 0.14459713530549778 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCT 2691 0.12220819444318295 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCC 2631 0.11948337405426025 No Hit CGTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT 2364 0.10735792332355425 TruSeq Adapter, Index 15 (95% over 21bp) AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2207 0.10022797663920653 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29854948727963015 0.0 2 0.0 0.0 0.0 0.973033360884295 0.0 3 0.0 0.0 0.0 1.6641386388613884 0.0 4 0.0 0.0 0.0 2.143888682004378 0.0 5 0.0 0.0 0.0 4.436416316224489 0.0 6 0.0 0.0 0.0 5.368668198621241 0.0 7 0.0 0.0 0.0 7.78853577235034 0.0 8 0.0 0.0 0.0 10.499595818308977 0.0 9 0.0 0.0 0.0 13.18545127567008 0.0 10 0.0 0.0 0.0 14.614574155986885 0.0 11 0.0 0.0 0.0 15.750370121436163 0.0 12 0.0 0.0 0.0 16.55728026594247 0.0 13 0.0 0.0 0.0 16.985849099446863 0.0 14 0.0 0.0 0.0 17.25669624610578 0.0 15 0.0 0.0 0.0 17.92700206178076 0.0 16 0.0 0.0 0.0 18.681186931761413 0.0 17 0.0 0.0 0.0 19.597680269575562 0.0 18 4.541367314871161E-5 0.0 0.0 20.123933914022835 0.0 19 4.541367314871161E-5 0.0 0.0 20.72502929181918 0.0 20 4.541367314871161E-5 0.0 0.0 21.36309139955858 0.0 21 4.541367314871161E-5 0.0 0.0 22.023497034487143 0.0 22 9.082734629742322E-5 0.0 0.0 22.644529014795776 0.0 23 9.082734629742322E-5 0.0 0.0 23.183543901397833 0.0 24 1.8165469259484644E-4 0.0 0.0 23.638089355943286 0.0 25 1.8165469259484644E-4 0.0 0.0 24.079782740987657 0.0 26 1.8165469259484644E-4 0.0 0.0 24.53818835775075 0.0 27 1.8165469259484644E-4 0.0 0.0 24.996548560840697 0.0 28 1.8165469259484644E-4 0.0 0.0 25.447097612149065 0.0 29 1.8165469259484644E-4 0.0 0.0 25.924758626327215 0.0 30 1.8165469259484644E-4 0.0 0.0 26.37053924195497 0.0 31 1.8165469259484644E-4 0.0 0.0 26.804239820525165 0.0 32 1.8165469259484644E-4 0.0 0.0 27.289757400158038 0.0 33 1.8165469259484644E-4 0.0 0.0 27.762195841924086 0.0 34 1.8165469259484644E-4 0.0 0.0 28.272690941788753 0.0 35 1.8165469259484644E-4 0.0 0.0 28.727418051026802 0.0 36 1.8165469259484644E-4 0.0 0.0 29.181781850879663 0.0 37 2.2706836574355808E-4 0.0 0.0 29.756582711922906 0.0 38 2.2706836574355808E-4 0.0 0.0 30.39223789498542 0.0 39 2.2706836574355808E-4 0.0 0.0 31.029164660896104 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAT 20 7.0346956E-4 45.0 40 TGCGATA 20 7.0346956E-4 45.0 37 CGACTTA 20 7.0346956E-4 45.0 15 CGTTTTT 26510 0.0 44.20219 1 ATAACGG 85 0.0 42.352943 1 TCGGGTA 80 0.0 42.1875 4 TATACGG 70 0.0 41.785713 1 CACTTAC 3290 0.0 41.2386 36 TGCATGG 470 0.0 41.17021 1 GCATAGG 470 0.0 41.17021 1 CGCACTT 3305 0.0 41.051437 34 AGGGTAC 615 0.0 40.975613 5 TATGCGG 440 0.0 40.909092 1 ACTACGG 110 0.0 40.909092 1 GCACTTA 3335 0.0 40.68216 35 ACTTACT 3350 0.0 40.56716 37 CCGCACT 3340 0.0 40.55389 33 CTTACTG 3330 0.0 40.472973 38 CCCGCAC 3435 0.0 39.956333 32 ACCCGCA 3405 0.0 39.911896 31 >>END_MODULE