##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043215_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 821530 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14822465399924 33.0 31.0 34.0 30.0 34.0 2 32.43965162562536 34.0 31.0 34.0 31.0 34.0 3 32.51489781261792 34.0 31.0 34.0 31.0 34.0 4 36.081328740277286 37.0 35.0 37.0 35.0 37.0 5 36.02428639246284 37.0 35.0 37.0 35.0 37.0 6 36.278253989507384 37.0 37.0 37.0 35.0 37.0 7 36.2096843694083 37.0 37.0 37.0 35.0 37.0 8 36.11466166786362 37.0 37.0 37.0 35.0 37.0 9 37.68579358027096 39.0 38.0 39.0 35.0 39.0 10 37.4945674534101 39.0 37.0 39.0 35.0 39.0 11 37.19735615254464 39.0 37.0 39.0 34.0 39.0 12 37.19823500054776 39.0 37.0 39.0 34.0 39.0 13 37.19537813591713 39.0 37.0 39.0 34.0 39.0 14 38.580171144084815 40.0 38.0 41.0 34.0 41.0 15 38.69965308631456 40.0 38.0 41.0 35.0 41.0 16 38.7510255255438 40.0 38.0 41.0 35.0 41.0 17 38.689603544605795 40.0 38.0 41.0 35.0 41.0 18 38.46570788650445 40.0 38.0 41.0 35.0 41.0 19 38.206369822161086 40.0 37.0 41.0 34.0 41.0 20 37.94733241634511 40.0 35.0 41.0 34.0 41.0 21 37.869209888865896 40.0 35.0 41.0 34.0 41.0 22 37.846352537338866 40.0 35.0 41.0 34.0 41.0 23 37.826227891860306 40.0 35.0 41.0 34.0 41.0 24 37.74103806312612 40.0 35.0 41.0 34.0 41.0 25 37.72129806580405 40.0 35.0 41.0 34.0 41.0 26 37.694931408469564 40.0 35.0 41.0 34.0 41.0 27 37.65610263776125 39.0 35.0 41.0 34.0 41.0 28 37.58155392986257 39.0 35.0 41.0 34.0 41.0 29 37.553201952454565 39.0 35.0 41.0 34.0 41.0 30 37.29845166944603 39.0 35.0 41.0 33.0 41.0 31 37.21475417817974 39.0 35.0 41.0 33.0 41.0 32 36.84867746765182 39.0 35.0 41.0 32.0 41.0 33 36.58067751634146 39.0 35.0 41.0 31.0 41.0 34 36.19320170900637 39.0 35.0 41.0 30.0 41.0 35 36.09373607780604 39.0 35.0 41.0 30.0 41.0 36 35.99658198726766 39.0 35.0 41.0 30.0 41.0 37 35.94918018818546 39.0 35.0 41.0 30.0 41.0 38 35.90801066303117 39.0 35.0 41.0 29.0 41.0 39 35.87880418244008 39.0 35.0 41.0 29.0 41.0 40 35.80874952831911 39.0 35.0 41.0 29.0 41.0 41 35.77318296349494 39.0 35.0 41.0 29.0 41.0 42 35.667325599795504 39.0 35.0 41.0 28.0 41.0 43 35.55096344625272 38.0 35.0 40.0 27.0 41.0 44 35.43563229583825 38.0 35.0 40.0 27.0 41.0 45 35.40305649215488 38.0 35.0 40.0 26.0 41.0 46 35.316517960390975 38.0 35.0 40.0 26.0 41.0 47 35.1675605273088 38.0 35.0 40.0 25.0 41.0 48 35.15090014972064 38.0 35.0 40.0 25.0 41.0 49 35.082930629435324 38.0 35.0 40.0 26.0 41.0 50 34.97083977456697 38.0 35.0 40.0 25.0 41.0 51 34.53199761420764 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 3.0 15 11.0 16 27.0 17 79.0 18 144.0 19 313.0 20 543.0 21 947.0 22 1469.0 23 2446.0 24 4447.0 25 8127.0 26 12788.0 27 14518.0 28 13750.0 29 13081.0 30 13468.0 31 15797.0 32 19294.0 33 25446.0 34 46324.0 35 81153.0 36 73330.0 37 64801.0 38 114472.0 39 294726.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.023724027120128 19.13003785619515 25.626574805545747 28.21966331113897 2 33.07608973500663 19.817413849768116 26.862804766715765 20.243691648509486 3 21.16903825788468 21.519116769929276 38.392511533358494 18.919333438827554 4 22.531130938614535 24.407873114797997 35.86564093824936 17.1953550083381 5 20.270349226443344 29.48875877935072 31.227222377758572 19.01366961644736 6 73.04809319197108 1.5726753739972978 21.233186858666148 4.146044575365477 7 73.65281852153907 1.3564933721227466 17.575742821321192 7.41494528501698 8 61.14712791985685 3.0126714788260927 26.028994680656826 9.811205920660232 9 35.1174028945991 17.426752522731974 28.83656105072243 18.61928353194649 10 27.137170888464208 19.36910398889876 41.94539456867065 11.54833055396638 11 24.192786629824838 15.642277214465691 40.58671016274512 19.578225992964345 12 19.212931968400422 19.408055700948232 43.10469489854296 18.274317432108383 13 13.471206164108432 22.91151875159763 42.29413411561355 21.32314096868039 14 12.248974474456197 21.74783635411975 45.075894976446385 20.927294194977662 15 13.090574902925031 18.124353340717928 47.86751548939174 20.917556266965295 16 13.470719267707814 24.382311053765534 38.99370686402201 23.153262814504643 17 15.517753460007548 21.511813323920002 41.50329263690919 21.467140579163267 18 17.481163195501075 28.29501052913466 38.82256277920465 15.401263496159604 19 16.943507845118255 23.142672817791194 36.16398670772826 23.749832629362288 20 14.211166968948183 30.121115479653817 34.731294048908744 20.93642350248926 21 14.786191618078465 23.604372329677553 36.52100349348167 25.088432558762307 22 12.860638077733011 26.955558531033557 32.41391063016567 27.769892761067766 23 12.54817231263618 23.110537655350385 42.24106240794615 22.10022762406729 24 17.323165313500418 21.62732949496671 38.71337626136599 22.336128930166886 25 13.617640256594404 24.92215743795114 38.7229924652782 22.737209840176256 26 16.87558579723199 21.563789514686015 37.06352780787068 24.497096880211313 27 22.06176280841844 21.336287171497084 39.23216437622485 17.36978564385963 28 17.45499251396784 22.03705281608706 35.568877582072474 24.939077087872626 29 23.89955327255243 21.1762199797938 33.68933575158546 21.234890996068312 30 23.271091743454285 20.194880284347498 34.66069407081908 21.873333901379134 31 29.17909266855745 20.02544033693231 30.024709992331385 20.77075700217886 32 23.373705159884604 20.662909449441898 36.46513213151072 19.49825325916278 33 27.584141784231857 19.48206395384222 34.530814455954136 18.402979805971782 34 22.38822684503305 22.44531544800555 37.29796842476842 17.868489282192982 35 30.88067386461846 18.38532981144937 34.98168052292673 15.75231580100544 36 24.449137584750407 27.02725402602461 32.98857010699548 15.535038282229499 37 25.164631845459084 24.792642995386657 34.94601536158144 15.09670979757282 38 22.644821248158923 27.250982922108747 30.21837303567733 19.885822794054995 39 27.0878726279016 24.747483354229306 32.103635898871616 16.06100811899748 40 19.448711550399864 22.45809647852178 37.245870509902254 20.8473214611761 41 23.45343444548586 23.689822647986077 30.714885640207907 22.14185726632016 42 22.45140165301328 18.350760167005465 37.37672391756844 21.821114262412816 43 26.744002044964883 20.866797317200835 34.01835599430331 18.370844643530972 44 18.891823792192618 23.484717539225592 36.01670054654121 21.606758122040585 45 23.4399230703687 20.993268657261453 33.796209511521184 21.77059876084866 46 26.082553284724842 19.86269521502562 33.10859006974791 20.946161430501625 47 20.661813932540504 17.729115187515976 37.8159044709262 23.79316640901732 48 20.92985040108091 16.46574075201149 32.37301133251373 30.231397514393876 49 22.80306257835989 16.065146738402735 38.16184436356554 22.969946319671834 50 21.37463026304578 16.111888792862096 38.28052536121626 24.232955582875853 51 18.669555585310334 15.699730989738658 37.429065280634916 28.201648144316096 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 212.0 1 1037.5 2 1863.0 3 25035.0 4 48207.0 5 27299.5 6 6392.0 7 6182.5 8 5973.0 9 6159.5 10 6346.0 11 6395.5 12 6445.0 13 6273.5 14 6102.0 15 5681.5 16 5261.0 17 4739.5 18 4218.0 19 3846.5 20 3475.0 21 3224.5 22 2974.0 23 2732.5 24 2491.0 25 2487.5 26 2609.5 27 2735.0 28 2953.0 29 3171.0 30 3831.5 31 4492.0 32 5274.0 33 6056.0 34 7038.0 35 8020.0 36 9788.5 37 11557.0 38 12670.0 39 13783.0 40 17663.0 41 21543.0 42 28922.0 43 36301.0 44 45451.0 45 54601.0 46 73881.0 47 93161.0 48 115232.0 49 137303.0 50 136046.5 51 134790.0 52 107899.0 53 81008.0 54 62727.0 55 44446.0 56 34753.0 57 25060.0 58 20126.5 59 15193.0 60 12236.0 61 9279.0 62 7609.5 63 5940.0 64 4603.0 65 3266.0 66 2880.5 67 2495.0 68 1939.0 69 1383.0 70 1272.5 71 1162.0 72 962.5 73 763.0 74 727.5 75 552.0 76 412.0 77 297.5 78 183.0 79 145.0 80 107.0 81 111.0 82 115.0 83 70.5 84 26.0 85 28.0 86 30.0 87 18.0 88 6.0 89 4.5 90 3.0 91 2.0 92 1.0 93 2.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 821530.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.60937732991853 #Duplication Level Percentage of deduplicated Percentage of total 1 72.79775959057592 23.738896112617855 2 12.029652454692826 7.84558952085718 3 4.952776930524757 4.845209152751925 4 2.485768977580312 3.2423751417968876 5 1.4555029213639903 2.373152198377855 6 0.9592445798379043 1.8768221073368028 7 0.6450364622777429 1.4723966172979475 8 0.4986842003953472 1.3009425007328468 9 0.3790898649669877 1.1125696003790728 >10 3.2305366372473103 22.425565484959748 >50 0.37177926496401614 8.224340221277998 >100 0.18099779765616297 10.588298012762355 >500 0.007902190750061164 1.8237999439521473 >1k 0.0041392427738415625 2.4410181178120207 >5k 7.525895952439205E-4 1.4672122673643155 >10k+ 3.7629479762196023E-4 5.221812999723046 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 42555 5.179969082078561 No Hit CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC 6607 0.8042311297213736 Illumina Single End Adapter 1 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT 5350 0.6512239358270544 Illumina Single End Adapter 1 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC 4215 0.5130670821515952 Illumina Single End Adapter 1 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 2993 0.3643202317626867 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC 1935 0.23553613379913088 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC 1907 0.2321278589948024 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC 1600 0.19475856024734337 No Hit GCCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 1581 0.19244580234440617 Illumina Single End Adapter 1 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 1423 0.17321339451998102 Illumina Single End Adapter 1 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 1140 0.13876547417623217 Illumina Single End Adapter 1 (95% over 21bp) CGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT 1054 0.12829720156293745 No Hit TCCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 1040 0.1265930641607732 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCT 1005 0.12233272065536255 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTC 983 0.11965479045196158 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTT 972 0.1183158253502611 No Hit CGTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT 940 0.11442065414531423 No Hit ACTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC 898 0.10930824193882147 Illumina Single End Adapter 1 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 864 0.10516962253356542 Illumina Single End Adapter 1 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 861 0.10480445023310166 Illumina Single End Adapter 1 (95% over 21bp) ATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG 842 0.10249169233016445 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6758122040582815 0.0 2 0.0 0.0 0.0 2.3904178788358306 0.0 3 0.0 0.0 0.0 3.988168417464974 0.0 4 0.0 0.0 0.0 5.053254293817633 0.0 5 0.0 0.0 0.0 10.247465095614281 0.0 6 0.0 0.0 0.0 11.666281207016176 0.0 7 0.0 0.0 0.0 16.283032877679453 0.0 8 0.0 0.0 0.0 21.770111864448044 0.0 9 0.0 0.0 0.0 26.342799410855356 0.0 10 0.0 0.0 0.0 28.90253551300622 0.0 11 0.0 0.0 0.0 31.101237934098574 0.0 12 0.0 0.0 0.0 32.69594537022385 0.0 13 0.0 0.0 0.0 33.37784377928986 0.0 14 0.0 0.0 0.0 33.85147225299137 0.0 15 0.0 0.0 0.0 35.37789246892992 0.0 16 0.0 0.0 0.0 37.135953647462664 0.0 17 0.0 0.0 0.0 39.11421372317505 0.0 18 0.0 0.0 0.0 40.186968217837446 0.0 19 0.0 0.0 0.0 41.32082821077745 0.0 20 0.0 0.0 0.0 42.5977140213991 0.0 21 0.0 0.0 0.0 43.81008605893881 0.0 22 8.520687010821272E-4 0.0 0.0 44.95672708239504 0.0 23 9.737928012367169E-4 0.0 0.0 45.8612588706438 0.0 24 0.00304310250386474 0.0 0.0 46.647596557642444 0.0 25 0.00304310250386474 0.0 0.0 47.394617360291164 0.0 26 0.00304310250386474 0.0 0.0 48.160992294864464 0.0 27 0.00304310250386474 0.0 0.0 48.87100897106618 0.0 28 0.0031648266040193297 0.0 0.0 49.58358185337115 0.0 29 0.0031648266040193297 0.0 0.0 50.39962022080752 0.0 30 0.0031648266040193297 0.0 0.0 51.15248378026365 0.0 31 0.0031648266040193297 0.0 0.0 51.816123574306474 0.0 32 0.0031648266040193297 0.0 0.0 52.48402371185471 0.0 33 0.0031648266040193297 0.0 0.0 53.14279454189135 0.0 34 0.0032865507041739193 0.0 0.0 53.83443087896973 0.0 35 0.0032865507041739193 0.0 0.0 54.418584835611604 0.0 36 0.0032865507041739193 0.0 0.0 55.00018258615023 0.0 37 0.0032865507041739193 0.0 0.0 55.58908378269814 0.0 38 0.0032865507041739193 0.0 0.0 56.143415334802135 0.0 39 0.0032865507041739193 0.0 0.0 56.6967730941049 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 65 0.0 45.000004 24 CTGTCGG 20 7.0321094E-4 45.000004 1 TCGCAGT 20 7.0321094E-4 45.000004 40 ATTAGTA 20 7.0321094E-4 45.000004 21 GCGACGG 20 7.0321094E-4 45.000004 1 CGACGTT 40 6.8102963E-9 45.000004 26 CGACGGC 20 7.0321094E-4 45.000004 2 ACGTTGT 20 7.0321094E-4 45.000004 36 GACGTTC 20 7.0321094E-4 45.000004 11 GGCCGAA 20 7.0321094E-4 45.000004 10 CAACCCG 40 6.8102963E-9 45.000004 22 GCGCCTA 20 7.0321094E-4 45.000004 28 CACGACG 65 0.0 45.000004 25 CATTACG 20 7.0321094E-4 45.000004 32 GTTACCA 20 7.0321094E-4 45.000004 17 ACGGCAT 20 7.0321094E-4 45.000004 4 CGTAGCT 20 7.0321094E-4 45.000004 2 GCTTAGC 20 7.0321094E-4 45.000004 11 TTAACGG 40 6.8102963E-9 45.000004 1 TCCCGGC 20 7.0321094E-4 45.000004 39 >>END_MODULE