##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043214_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 905798 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26160578848706 33.0 31.0 34.0 31.0 34.0 2 32.594313522440984 34.0 31.0 34.0 31.0 34.0 3 32.68886661264432 34.0 31.0 34.0 31.0 34.0 4 36.177517503902635 37.0 35.0 37.0 35.0 37.0 5 36.06776345277866 37.0 35.0 37.0 35.0 37.0 6 36.317646980894196 37.0 37.0 37.0 35.0 37.0 7 36.247294650683706 37.0 37.0 37.0 35.0 37.0 8 36.22453571326057 37.0 37.0 37.0 35.0 37.0 9 37.754971859067915 39.0 38.0 39.0 35.0 39.0 10 37.53992391239548 39.0 37.0 39.0 35.0 39.0 11 37.29794280844074 39.0 37.0 39.0 35.0 39.0 12 37.31679248574186 39.0 37.0 39.0 34.0 39.0 13 37.323424207163185 39.0 37.0 39.0 34.0 39.0 14 38.70404438958796 40.0 38.0 41.0 35.0 41.0 15 38.7811233851256 40.0 38.0 41.0 35.0 41.0 16 38.797479128900704 40.0 38.0 41.0 35.0 41.0 17 38.79975778264028 40.0 38.0 41.0 35.0 41.0 18 38.54871174367795 40.0 38.0 41.0 35.0 41.0 19 38.30206514035138 40.0 37.0 41.0 35.0 41.0 20 38.021993866182086 40.0 35.0 41.0 34.0 41.0 21 37.96297960472423 40.0 35.0 41.0 34.0 41.0 22 37.90302584019837 40.0 35.0 41.0 34.0 41.0 23 37.91109828019051 40.0 35.0 41.0 34.0 41.0 24 37.8259413246662 40.0 35.0 41.0 34.0 41.0 25 37.741444560487 40.0 35.0 41.0 34.0 41.0 26 37.68994301157653 40.0 35.0 41.0 34.0 41.0 27 37.694077487475134 40.0 35.0 41.0 34.0 41.0 28 37.60737051748845 40.0 35.0 41.0 34.0 41.0 29 37.520563083601424 40.0 35.0 41.0 33.0 41.0 30 37.48078379506248 40.0 35.0 41.0 33.0 41.0 31 37.167736073605816 39.0 35.0 41.0 33.0 41.0 32 37.01017334990804 39.0 35.0 41.0 32.0 41.0 33 36.70989227178686 39.0 35.0 41.0 31.0 41.0 34 36.39233581880287 39.0 35.0 41.0 30.0 41.0 35 36.23870001920958 39.0 35.0 41.0 30.0 41.0 36 36.24986034413854 39.0 35.0 41.0 30.0 41.0 37 36.275759054447015 39.0 35.0 41.0 30.0 41.0 38 36.25116637484295 39.0 35.0 41.0 30.0 41.0 39 36.27714567707149 40.0 35.0 41.0 30.0 41.0 40 36.28262592763508 39.0 35.0 41.0 30.0 41.0 41 36.213414028293286 39.0 35.0 41.0 30.0 41.0 42 36.07458506201162 39.0 35.0 41.0 30.0 41.0 43 35.92563352977154 39.0 35.0 41.0 29.0 41.0 44 35.80849703797094 39.0 35.0 41.0 29.0 41.0 45 35.739844866073895 39.0 35.0 41.0 28.0 41.0 46 35.70135394425689 39.0 35.0 41.0 27.0 41.0 47 35.60599935084864 39.0 35.0 41.0 27.0 41.0 48 35.5469177454576 38.0 35.0 41.0 27.0 41.0 49 35.48909690681587 38.0 35.0 41.0 27.0 41.0 50 35.36432847058616 38.0 35.0 40.0 26.0 41.0 51 35.27125805091201 38.0 35.0 40.0 26.0 41.0 52 34.91529789202449 38.0 35.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 5.0 15 11.0 16 20.0 17 53.0 18 165.0 19 325.0 20 629.0 21 980.0 22 1629.0 23 2857.0 24 5334.0 25 9639.0 26 13880.0 27 14684.0 28 13488.0 29 12989.0 30 14145.0 31 16050.0 32 20114.0 33 26240.0 34 47260.0 35 82878.0 36 77943.0 37 72714.0 38 122668.0 39 348817.0 40 279.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.047200369177233 19.193683359866107 25.171727029646785 28.587389241309875 2 33.153087112137584 19.574010982581104 26.48559612628864 20.787305778992668 3 22.4287313506985 22.13440524267 36.26746802267172 19.169395383959777 4 23.618510970437118 24.51451648159965 33.417826049516556 18.449146498446673 5 20.925084842315837 30.099867740931202 30.086730153963686 18.888317262789275 6 75.67647532893648 1.6289503840812192 19.165641787683345 3.5289324992989606 7 76.19204281749352 1.2171587925784777 16.149516779679356 6.441281610248642 8 65.20184411977064 3.3614558654357816 23.378612008416887 8.058088006376698 9 33.78888008143096 23.506786281268006 26.719533494222773 15.98480014307826 10 24.601069995738563 19.575666980938355 42.95814298552216 12.865120037800923 11 22.884793298285047 17.56440177611344 39.44102327450491 20.109781651096604 12 17.735852806034018 21.470129101631933 43.14670599846765 17.6473120938664 13 14.090669222056132 24.586497210194768 41.43561809586685 19.887215471882254 14 13.559976948502866 22.36801141093268 44.872366686612246 19.199644953952205 15 13.79932391107068 20.62490754009172 45.63721712788061 19.93855142095699 16 13.627100081916717 24.089918502800845 38.84088946983765 23.44209194544479 17 15.704053221579203 21.385231585850267 40.737228388669436 22.173486803901092 18 16.77239296178618 27.11940189755332 39.789666128651206 16.3185390120093 19 17.58350095716705 23.16046182482187 36.062345026153736 23.193692191857345 20 15.146312974857528 28.64667398249941 35.975349912452884 20.231663130190174 21 15.1987529228371 23.05536112908176 36.59226450047362 25.15362144760752 22 12.893272009874165 26.153402855824364 34.15463491860216 26.798690215699306 23 12.821180881388566 22.91923806411584 42.42159951777328 21.837981536722314 24 16.914698420619168 21.824623149973835 39.08255483010561 22.17812359930139 25 13.947259764318314 25.460643543041606 38.28679241950192 22.30530427313816 26 17.282330055928586 21.745356028606817 36.27519601500555 24.69711790045904 27 21.487903483999744 22.03935093696387 38.47568663211886 17.997058946917523 28 16.871532063440192 22.05999571648425 35.65739822786096 25.4110739922146 29 21.42939154204359 22.81071497177075 34.124937348062154 21.634956138123513 30 23.95754903411136 21.766332007798646 32.463418996288354 21.812699961801638 31 22.113870863040102 20.4140437492686 36.504386187648905 20.967699200042393 32 22.71499826672172 24.20274719087479 31.67361817977077 21.408636362632727 33 20.350122212678766 20.41371254959715 38.43218907526843 20.803976162455648 34 18.172263573114535 22.335443443240106 39.39399292115902 20.098300062486338 35 19.19412495942804 23.41007597720463 36.36296392793979 21.032835135427547 36 17.863254279651755 27.513419106688247 36.96111053457835 17.66221607908165 37 15.699968425631322 22.81954696300941 41.362091768804966 20.1183928425543 38 14.88775643134562 25.051501548910466 35.05053002987421 25.010211989869706 39 20.312807049695405 23.81712037341659 34.7946230837339 21.075449493154103 40 16.825826508780104 21.10227666654155 38.028898275332914 24.04299854934544 41 21.0807486878973 22.73332464854195 31.560127092353923 24.625799571206823 42 20.517267646870494 20.387547775552605 35.59458069017595 23.500603887400946 43 22.568056012488434 23.001154782854456 34.64293363420983 19.787855570447274 44 17.12291261407069 24.127233665784203 36.258415231652094 22.49143848849302 45 19.833340325326397 21.3889851821267 35.52436635982857 23.25330813271833 46 22.623035157949122 19.76235319574563 34.89961337958353 22.71499826672172 47 17.746892795082346 19.480943874903677 37.66656583476669 25.105597495247284 48 18.710352639330182 18.09730204747637 33.76911850103445 29.423226812159005 49 20.079532081104176 18.271954674220964 38.19891410667721 23.449599137997655 50 19.22890092493028 17.05888067759037 38.2975012088788 25.414717188600548 51 16.997719138262614 16.50213402988304 37.72375297803705 28.776393853817297 52 16.214652715064506 16.846029688738547 43.673534275853996 23.265783320342948 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 199.0 1 909.0 2 1619.0 3 24286.0 4 46953.0 5 26463.5 6 5974.0 7 5934.0 8 5894.0 9 6072.5 10 6251.0 11 6453.5 12 6656.0 13 6502.5 14 6212.0 15 6075.0 16 5545.0 17 5015.0 18 4683.5 19 4352.0 20 4179.5 21 4007.0 22 3928.0 23 3849.0 24 4154.5 25 4460.0 26 4845.5 27 5231.0 28 5570.0 29 5909.0 30 6620.0 31 7331.0 32 8530.5 33 9730.0 34 11232.0 35 12734.0 36 14574.0 37 16414.0 38 18695.0 39 24685.5 40 28395.0 41 38941.0 42 49487.0 43 66120.5 44 82754.0 45 104916.5 46 127079.0 47 130803.5 48 134528.0 49 118663.5 50 102799.0 51 83435.5 52 64072.0 53 51226.0 54 38380.0 55 31715.5 56 25051.0 57 21747.0 58 18443.0 59 16334.0 60 14225.0 61 11697.0 62 9169.0 63 7801.0 64 5550.0 65 4667.0 66 4019.0 67 3371.0 68 2890.5 69 2410.0 70 2281.5 71 2153.0 72 2285.5 73 2418.0 74 2022.5 75 1627.0 76 1324.5 77 1022.0 78 866.5 79 711.0 80 532.0 81 353.0 82 244.5 83 136.0 84 108.5 85 81.0 86 53.5 87 26.0 88 22.5 89 10.5 90 2.0 91 4.0 92 6.0 93 4.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 905798.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.63038252328534 #Duplication Level Percentage of deduplicated Percentage of total 1 72.04195264266548 23.50756472454582 2 11.956602640456888 7.802970356740636 3 5.056021172611098 4.949397147243895 4 2.6610068495874444 3.4731868559648293 5 1.5646160907597777 2.552701077178944 6 0.9946180508769781 1.947286047880816 7 0.7021729950081507 1.603852139724582 8 0.5219491260300685 1.3625119712044484 9 0.39818783975241223 1.169371937451767 >10 3.5310908749895087 24.770302158133457 >50 0.41064943596971754 9.069498267596877 >100 0.15025415259766597 8.54083208193555 >500 0.006458888912568665 1.451998025280586 >1k 0.0033994152171414028 2.0595299721455036 >5k 6.798830434282806E-4 1.2964822703956829 >10k+ 3.399415217141403E-4 4.442514966576583 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40050 4.421515613856511 No Hit CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 6361 0.7022537033643262 No Hit CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCTT 5327 0.5881002166045851 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 4248 0.4689787347730951 No Hit CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 2570 0.2837277185421032 No Hit TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 1892 0.20887659279441995 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG 1890 0.20865579301345333 No Hit CGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 1691 0.1866862148072749 No Hit GCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1413 0.1559950452529151 No Hit ACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1391 0.15356624766228233 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT 1310 0.1446238565331343 No Hit AGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 1118 0.12342707756033905 No Hit ACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 1044 0.11525748566457422 No Hit TCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 958 0.10576309508300967 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6090761957964138 0.0 2 0.0 0.0 0.0 2.1556682615770844 0.0 3 0.0 0.0 0.0 3.513255714850331 0.0 4 0.0 0.0 0.0 4.471085164683517 0.0 5 0.0 0.0 0.0 8.809469661006096 0.0 6 0.0 0.0 0.0 9.853079825744812 0.0 7 0.0 0.0 0.0 13.636263272826833 0.0 8 0.0 0.0 0.0 18.036140508148616 0.0 9 0.0 0.0 0.0 21.70263127098978 0.0 10 0.0 0.0 0.0 23.78046760977613 0.0 11 0.0 0.0 0.0 25.792836813505883 0.0 12 0.0 0.0 0.0 27.267448150691436 0.0 13 1.1039989048330864E-4 0.0 0.0 27.91361870969024 0.0 14 1.1039989048330864E-4 0.0 0.0 28.377850249172553 0.0 15 2.207997809666173E-4 0.0 0.0 29.829277609356613 0.0 16 2.207997809666173E-4 0.0 0.0 31.589603863112966 0.0 17 2.207997809666173E-4 0.0 0.0 33.65430261493181 0.0 18 2.207997809666173E-4 0.0 0.0 34.77066630749902 0.0 19 2.207997809666173E-4 0.0 0.0 35.92191636545896 0.0 20 3.3119967144992594E-4 0.0 0.0 37.11434558256918 0.0 21 3.3119967144992594E-4 0.0 0.0 38.306995599460365 0.0 22 9.935990143497778E-4 0.0 0.0 39.570963945603765 0.0 23 0.0014351985762830124 0.0 0.0 40.551977372438444 0.0 24 0.00242879759063279 0.0 0.0 41.33857659213202 0.0 25 0.00242879759063279 0.0 0.0 42.08454865212774 0.0 26 0.0025391974811160988 0.0 0.0 42.83449510818085 0.0 27 0.0025391974811160988 0.0 0.0 43.57980476883367 0.0 28 0.0025391974811160988 0.0 0.0 44.31749683704314 0.0 29 0.0025391974811160988 0.0 0.0 45.230724731121065 0.0 30 0.0025391974811160988 0.0 0.0 46.00926475880936 0.0 31 0.0025391974811160988 0.0 0.0 46.65731211594638 0.0 32 0.0025391974811160988 0.0 0.0 47.32710825150861 0.0 33 0.0025391974811160988 0.0 0.0 48.006067577980964 0.0 34 0.0025391974811160988 0.0 0.0 48.74022684969496 0.0 35 0.0025391974811160988 0.0 0.0 49.382975012088785 0.0 36 0.0025391974811160988 0.0 0.0 50.01810558203926 0.0 37 0.0025391974811160988 0.0 0.0 50.645508159655904 0.0 38 0.0025391974811160988 0.0 0.0 51.251161958847334 0.0 39 0.0025391974811160988 0.0 0.0 51.8824285326309 0.0 40 0.0025391974811160988 0.0 0.0 52.49569992426567 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACGG 70 0.0 46.000004 1 GAATAGT 35 1.0192525E-7 46.000004 8 TTACCGG 35 1.0192525E-7 46.000004 1 AGCGTTG 20 6.3107436E-4 46.0 30 AACGTGC 20 6.3107436E-4 46.0 13 CGGCGAT 40 5.6097633E-9 46.0 5 CTCACGC 20 6.3107436E-4 46.0 46 ACCGGCC 40 5.6097633E-9 46.0 20 TCCGAGG 40 5.6097633E-9 46.0 1 ACGCACC 20 6.3107436E-4 46.0 20 CGTGAGT 20 6.3107436E-4 46.0 31 GCCGGTC 40 5.6097633E-9 46.0 31 AGGGTCG 50 1.6370905E-11 46.0 5 CACGACC 30 1.8609626E-6 46.0 26 ACGGGTC 40 5.6097633E-9 46.0 4 CGTTCCG 20 6.3107436E-4 46.0 18 AGTATAC 25 3.4165787E-5 46.0 30 CGTTAGC 20 6.3107436E-4 46.0 18 ACGATGG 20 6.3107436E-4 46.0 1 GCCGATG 30 1.8609626E-6 46.0 8 >>END_MODULE