SRR1043213_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043213_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	891992
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37640	4.219768787164011	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	6131	0.6873380030314173	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	5182	0.5809469143221015	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	4184	0.4690625028027157	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	2468	0.27668409582148723	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	2002	0.22444147481143328	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC	1814	0.20336505260136864	No Hit
CGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	1716	0.19237840698122852	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	1417	0.15885792697692355	No Hit
ACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	1362	0.15269195239419187	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	1187	0.13307294235822742	No Hit
AGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	1159	0.1299339007524731	No Hit
ACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	994	0.11143597700427807	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	960	0.10762428362586213	No Hit
GGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	923	0.10347626436111533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGG	20	7.0324366E-4	45.0	1
ACTGCGG	70	0.0	45.0	1
CGTGCGG	20	7.0324366E-4	45.0	1
TAGACGG	90	0.0	45.0	1
CGCATTG	20	7.0324366E-4	45.0	31
GGCGTAC	70	0.0	45.0	7
TAAACGG	50	2.1827873E-11	45.0	1
TCGATTG	25	3.8901002E-5	45.0	13
TCGATGG	95	0.0	45.0	1
TTATCGG	20	7.0324366E-4	45.0	1
GCCGATG	45	3.8380676E-10	45.0	8
TCTACGA	40	6.8121153E-9	45.0	10
ACAGCGC	25	3.8901002E-5	45.0	39
CGTACTC	55	1.8189894E-12	45.0	9
GCGATCG	35	1.2115197E-7	45.0	8
TACTCGA	25	3.8901002E-5	45.0	20
CGGCTTT	20	7.0324366E-4	45.0	27
CGGTCTA	80	0.0	45.0	30
CAGTATA	20	7.0324366E-4	45.0	26
CTCTCGA	20	7.0324366E-4	45.0	31