##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043213_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 891992 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.204025372424866 33.0 31.0 34.0 30.0 34.0 2 32.500836330370674 34.0 31.0 34.0 31.0 34.0 3 32.583824742822806 34.0 31.0 34.0 31.0 34.0 4 36.126258979901166 37.0 35.0 37.0 35.0 37.0 5 36.071446829119544 37.0 35.0 37.0 35.0 37.0 6 36.31357231903425 37.0 37.0 37.0 35.0 37.0 7 36.254552731414634 37.0 37.0 37.0 35.0 37.0 8 36.158770482246474 37.0 37.0 37.0 35.0 37.0 9 37.688846985174756 39.0 38.0 39.0 35.0 39.0 10 37.473799092368544 39.0 37.0 39.0 35.0 39.0 11 37.28193077964825 39.0 37.0 39.0 34.0 39.0 12 37.29784459950314 39.0 37.0 39.0 34.0 39.0 13 37.322321276424006 39.0 37.0 39.0 34.0 39.0 14 38.69899730042422 40.0 38.0 41.0 35.0 41.0 15 38.78428057650741 40.0 38.0 41.0 35.0 41.0 16 38.82789307527422 40.0 38.0 41.0 35.0 41.0 17 38.80926398443035 40.0 38.0 41.0 35.0 41.0 18 38.59313984878788 40.0 38.0 41.0 35.0 41.0 19 38.37533072045489 40.0 37.0 41.0 35.0 41.0 20 38.121029112368724 40.0 35.0 41.0 34.0 41.0 21 38.06429429860358 40.0 35.0 41.0 34.0 41.0 22 38.012064009542684 40.0 35.0 41.0 34.0 41.0 23 37.98748643485592 40.0 35.0 41.0 34.0 41.0 24 37.907615763370075 40.0 35.0 41.0 34.0 41.0 25 37.89147996843021 40.0 35.0 41.0 34.0 41.0 26 37.87153023793935 40.0 35.0 41.0 34.0 41.0 27 37.85490564937802 40.0 35.0 41.0 34.0 41.0 28 37.72630584130799 40.0 35.0 41.0 34.0 41.0 29 37.67906999165912 40.0 35.0 41.0 34.0 41.0 30 37.572822401994635 40.0 35.0 41.0 34.0 41.0 31 37.28450479376497 39.0 35.0 41.0 33.0 41.0 32 37.131899165014936 40.0 35.0 41.0 33.0 41.0 33 36.804919775065244 39.0 35.0 41.0 31.0 41.0 34 36.44823159848967 39.0 35.0 41.0 31.0 41.0 35 36.28906537278361 39.0 35.0 41.0 30.0 41.0 36 36.28225365249912 39.0 35.0 41.0 30.0 41.0 37 36.26659768249043 39.0 35.0 41.0 30.0 41.0 38 36.22879913721199 39.0 35.0 41.0 30.0 41.0 39 36.20416438712455 39.0 35.0 41.0 30.0 41.0 40 36.18712611772303 39.0 35.0 41.0 30.0 41.0 41 36.08009600982968 39.0 35.0 41.0 30.0 41.0 42 35.93035027219975 39.0 35.0 41.0 29.0 41.0 43 35.76316827953614 39.0 35.0 41.0 28.0 41.0 44 35.683840213813575 39.0 35.0 40.0 28.0 41.0 45 35.65842182441098 39.0 35.0 40.0 27.0 41.0 46 35.562473654472235 38.0 35.0 40.0 27.0 41.0 47 35.40972901102252 38.0 35.0 40.0 26.0 41.0 48 35.373156934142905 38.0 35.0 40.0 26.0 41.0 49 35.30497246612077 38.0 35.0 40.0 26.0 41.0 50 35.21629341967193 38.0 35.0 40.0 26.0 41.0 51 34.763877927156294 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 3.0 14 1.0 15 8.0 16 28.0 17 49.0 18 133.0 19 248.0 20 483.0 21 836.0 22 1410.0 23 2315.0 24 4264.0 25 8242.0 26 12606.0 27 14781.0 28 14438.0 29 13405.0 30 14159.0 31 16374.0 32 19905.0 33 25839.0 34 47362.0 35 81329.0 36 75059.0 37 72488.0 38 129714.0 39 336476.0 40 35.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.391949703584785 19.20902878052718 25.328478282316436 28.070543233571605 2 32.88370299285195 19.67315850366371 26.487793612498766 20.955344890985568 3 22.629687261769163 22.17486255482112 35.92767648140342 19.267773702006295 4 23.77543744786949 24.72174638337564 32.888972098404466 18.613844070350407 5 21.064987129929417 30.28143750168163 29.723360747630025 18.93021462075893 6 76.18666983560391 1.586000771307366 18.705885254576273 3.521444138512453 7 76.6223239670311 1.1673871514542733 15.733437071184495 6.476851810330138 8 65.49643942995004 3.2787289572103786 23.012874554928743 8.211957057910833 9 33.91812931057678 23.544829998475322 26.400685207939084 16.136355483008817 10 24.87522309617127 19.556565529735693 42.60296056466874 12.965250809424301 11 23.112090691396336 17.43816088036664 39.15887138001238 20.290877048224647 12 17.960362873209625 21.395931802078945 42.862940474802464 17.780764849908966 13 14.251136781495799 24.499322863882185 41.1169606902304 20.13257966439161 14 13.68655772697513 22.198517475493055 44.74042368092987 19.37450111660194 15 13.882859935963552 20.566440057758363 45.44917443205769 20.101525574220396 16 13.635884626767952 23.94573045498166 38.77702939039812 23.641355527852266 17 15.886689566722573 21.31263509089768 40.51617054861479 22.284504793764967 18 16.915510453008547 27.198898644830894 39.60203678956762 16.283554112592938 19 17.70823056709029 23.156037273876894 35.799872644597706 23.335859514435107 20 15.1427367061588 28.741849702687915 35.69572372846393 20.419689862689353 21 15.151032744688292 23.113660212199214 36.216468309132814 25.518838733979678 22 12.948210297850204 26.20124395734491 33.8674562103696 26.983089534435283 23 12.976125346415662 22.90099014340936 42.0605790186459 22.06230549152907 24 16.983224064789816 21.85468031103418 38.793733576085884 22.36836204809012 25 13.91436246064987 25.346415662920744 38.176463466040055 22.562758410389332 26 17.40957318002852 21.700530946465886 36.0361976340595 24.853698239446093 27 21.58393797253787 21.968022134727665 38.26805621575081 18.17998367698365 28 17.06237275670634 22.027776033865777 35.42094547933166 25.488905730096235 29 21.599408963309088 22.742916976833875 33.71756697369483 21.940107086162207 30 24.14461116243195 21.629790401707638 32.14557978098458 22.08001865487583 31 22.390895882474283 20.304666409564213 36.12958412183069 21.17485358613082 32 23.038435322289885 24.06333240656867 31.228194871702886 21.67003739943856 33 20.701530955434578 20.179889505735478 38.20953551152925 20.909044027300695 34 18.482004322908725 22.19022143696356 39.21257141319653 20.115202826931185 35 19.297482488632184 23.362653476712797 36.274764796096825 21.065099238558194 36 17.935811083507474 27.476928044197706 36.97678902949802 17.610471842796795 37 15.889380173813217 22.616122117687155 41.305303186575664 20.189194521923966 38 14.911008170476867 24.945403097785633 34.98080700275339 25.16278172898412 39 20.40769423941022 23.69729773361196 34.75849559188872 21.136512435089102 40 16.89017390290496 21.04278962143158 37.916707773163886 24.150328702499575 41 21.16151265930636 22.580920008251194 31.460483950528705 24.79708338191374 42 20.83662185311079 20.175629377841954 35.34560848079355 23.642140288253707 43 22.713208190207983 22.797401770419466 34.56880779199813 19.920582247374416 44 17.1729118646804 24.022749082951417 36.26086332612849 22.5434757262397 45 20.111951676696652 21.073507385716464 35.493143436264 23.32139750132288 46 22.8789047435403 19.580220450407626 34.770715432425405 22.77015937362667 47 17.941304406317546 19.192773029354523 37.661436425438794 25.204486138889138 48 18.87528139265823 17.8938824563449 33.605009910402785 29.625826240594087 49 20.192894106673602 17.99747082933479 38.20370586283285 23.605929201158755 50 19.42371680463502 16.747011183956808 38.23767477735227 25.591597234055914 51 17.15205965972789 16.37167149481161 37.531614633315094 28.944654212145398 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 827.0 2 1481.0 3 22856.0 4 44231.0 5 25281.0 6 6331.0 7 6116.0 8 5901.0 9 6075.0 10 6249.0 11 6363.5 12 6478.0 13 6249.5 14 6021.0 15 5705.5 16 5390.0 17 4911.5 18 4433.0 19 4191.0 20 3949.0 21 3847.5 22 3746.0 23 3545.0 24 3344.0 25 3920.0 26 4598.0 27 4700.0 28 5466.5 29 6233.0 30 7006.5 31 7780.0 32 9096.0 33 10412.0 34 11735.5 35 13059.0 36 15703.0 37 18347.0 38 20671.0 39 22995.0 40 29144.5 41 35294.0 42 45467.5 43 55641.0 44 76090.5 45 96540.0 46 117813.0 47 139086.0 48 137546.0 49 136006.0 50 110659.5 51 85313.0 52 67705.0 53 50097.0 54 40444.0 55 30791.0 56 26352.5 57 21914.0 58 19008.0 59 16102.0 60 13452.0 61 10802.0 62 9217.5 63 7633.0 64 6444.5 65 5256.0 66 4726.5 67 4197.0 68 3452.5 69 2708.0 70 2402.5 71 2097.0 72 2128.0 73 2159.0 74 2009.0 75 1549.0 76 1239.0 77 1029.0 78 819.0 79 590.5 80 362.0 81 268.0 82 174.0 83 137.5 84 101.0 85 62.0 86 23.0 87 21.0 88 19.0 89 12.5 90 6.0 91 5.0 92 4.0 93 2.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 891992.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.02044026911077 #Duplication Level Percentage of deduplicated Percentage of total 1 71.19113545687065 22.79571500586901 2 12.437149504120624 7.964860056293903 3 5.132342438562558 4.930195934838442 4 2.639910320282714 3.3812436290568697 5 1.6193024809686152 2.5925389184739216 6 1.03854828546578 1.9952864004806645 7 0.7164340586574542 1.6058373787398332 8 0.5525565104304252 1.4154482190036568 9 0.41357393488553823 1.1918537530977138 >10 3.670051122342081 25.258498351778364 >50 0.4236389258920574 9.11984586822857 >100 0.15405050261400832 8.672502172973205 >500 0.007066536817156101 1.5795030048513008 >1k 0.0031799415677202453 1.9582850448371294 >5k 7.066536817156101E-4 1.2799167318875986 >10k+ 3.5332684085780504E-4 4.2584695295897825 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37640 4.219768787164011 No Hit CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 6131 0.6873380030314173 No Hit CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT 5182 0.5809469143221015 No Hit GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 4184 0.4690625028027157 No Hit CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 2468 0.27668409582148723 No Hit TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 2002 0.22444147481143328 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC 1814 0.20336505260136864 No Hit CGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT 1716 0.19237840698122852 No Hit GCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 1417 0.15885792697692355 No Hit ACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 1362 0.15269195239419187 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC 1187 0.13307294235822742 No Hit AGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 1159 0.1299339007524731 No Hit ACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC 994 0.11143597700427807 No Hit TCCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 960 0.10762428362586213 No Hit GGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG 923 0.10347626436111533 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5982116431537503 0.0 2 0.0 0.0 0.0 2.145310720275518 0.0 3 0.0 0.0 0.0 3.5131480999829594 0.0 4 0.0 0.0 0.0 4.510466461582615 0.0 5 0.0 0.0 0.0 8.881133463080387 0.0 6 0.0 0.0 0.0 9.949080260809515 0.0 7 0.0 0.0 0.0 13.822657602310334 0.0 8 0.0 0.0 0.0 18.353752051587907 0.0 9 1.121086287769397E-4 0.0 0.0 22.160736867595226 0.0 10 1.121086287769397E-4 0.0 0.0 24.30941084673405 0.0 11 1.121086287769397E-4 0.0 0.0 26.372209616229743 0.0 12 1.121086287769397E-4 0.0 0.0 27.90092287823209 0.0 13 1.121086287769397E-4 0.0 0.0 28.56404541744769 0.0 14 1.121086287769397E-4 0.0 0.0 29.042300827810116 0.0 15 1.121086287769397E-4 0.0 0.0 30.552404057435492 0.0 16 1.121086287769397E-4 0.0 0.0 32.33694921030682 0.0 17 1.121086287769397E-4 0.0 0.0 34.45187849218379 0.0 18 1.121086287769397E-4 0.0 0.0 35.58574516363375 0.0 19 1.121086287769397E-4 0.0 0.0 36.74169723495278 0.0 20 1.121086287769397E-4 0.0 0.0 37.982851864142276 0.0 21 1.121086287769397E-4 0.0 0.0 39.21896160503682 0.0 22 6.726517726616383E-4 0.0 0.0 40.48343482901192 0.0 23 0.0012331949165463368 0.0 0.0 41.500932743791424 0.0 24 0.0021300639467618544 0.0 0.0 42.3202226028933 0.0 25 0.0021300639467618544 0.0 0.0 43.079758562857066 0.0 26 0.0021300639467618544 0.0 0.0 43.83570704669997 0.0 27 0.0021300639467618544 0.0 0.0 44.574727127597555 0.0 28 0.0021300639467618544 0.0 0.0 45.31924053130521 0.0 29 0.0021300639467618544 0.0 0.0 46.25019058466892 0.0 30 0.0021300639467618544 0.0 0.0 47.03674472416793 0.0 31 0.0021300639467618544 0.0 0.0 47.69392550605835 0.0 32 0.0021300639467618544 0.0 0.0 48.35032152754733 0.0 33 0.0021300639467618544 0.0 0.0 49.028354514390266 0.0 34 0.0021300639467618544 0.0 0.0 49.76513242271231 0.0 35 0.0021300639467618544 0.0 0.0 50.41805307670921 0.0 36 0.0021300639467618544 0.0 0.0 51.0520273724428 0.0 37 0.0021300639467618544 0.0 0.0 51.690037578812365 0.0 38 0.0021300639467618544 0.0 0.0 52.2931820016323 0.0 39 0.0021300639467618544 0.0 0.0 52.90798572184504 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCGG 20 7.0324366E-4 45.0 1 ACTGCGG 70 0.0 45.0 1 CGTGCGG 20 7.0324366E-4 45.0 1 TAGACGG 90 0.0 45.0 1 CGCATTG 20 7.0324366E-4 45.0 31 GGCGTAC 70 0.0 45.0 7 TAAACGG 50 2.1827873E-11 45.0 1 TCGATTG 25 3.8901002E-5 45.0 13 TCGATGG 95 0.0 45.0 1 TTATCGG 20 7.0324366E-4 45.0 1 GCCGATG 45 3.8380676E-10 45.0 8 TCTACGA 40 6.8121153E-9 45.0 10 ACAGCGC 25 3.8901002E-5 45.0 39 CGTACTC 55 1.8189894E-12 45.0 9 GCGATCG 35 1.2115197E-7 45.0 8 TACTCGA 25 3.8901002E-5 45.0 20 CGGCTTT 20 7.0324366E-4 45.0 27 CGGTCTA 80 0.0 45.0 30 CAGTATA 20 7.0324366E-4 45.0 26 CTCTCGA 20 7.0324366E-4 45.0 31 >>END_MODULE