##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043212_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1036695 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.307083568455525 33.0 31.0 34.0 31.0 34.0 2 32.63274154886442 34.0 31.0 34.0 31.0 34.0 3 32.72063721731078 34.0 31.0 34.0 31.0 34.0 4 36.21374656962752 37.0 37.0 37.0 35.0 37.0 5 36.11449944294127 37.0 35.0 37.0 35.0 37.0 6 36.344325958936814 37.0 37.0 37.0 35.0 37.0 7 36.276709157466755 37.0 37.0 37.0 35.0 37.0 8 36.24854947694356 37.0 37.0 37.0 35.0 37.0 9 37.78366250440101 39.0 38.0 39.0 35.0 39.0 10 37.56961015534945 39.0 37.0 39.0 35.0 39.0 11 37.36547489859602 39.0 37.0 39.0 35.0 39.0 12 37.38587337645112 39.0 37.0 39.0 35.0 39.0 13 37.38896493182662 39.0 37.0 39.0 35.0 39.0 14 38.800820877885975 40.0 38.0 41.0 35.0 41.0 15 38.87332436251742 41.0 38.0 41.0 35.0 41.0 16 38.875587323176056 41.0 38.0 41.0 35.0 41.0 17 38.84631159598532 41.0 38.0 41.0 35.0 41.0 18 38.6039664510777 40.0 38.0 41.0 35.0 41.0 19 38.337096252996304 40.0 37.0 41.0 35.0 41.0 20 38.04934141671369 40.0 35.0 41.0 34.0 41.0 21 37.97955425655569 40.0 35.0 41.0 34.0 41.0 22 37.92466443843175 40.0 35.0 41.0 34.0 41.0 23 37.93755347522656 40.0 35.0 41.0 34.0 41.0 24 37.85859003853592 40.0 35.0 41.0 34.0 41.0 25 37.76529934069326 40.0 35.0 41.0 34.0 41.0 26 37.6977249817931 40.0 35.0 41.0 34.0 41.0 27 37.7104423191006 40.0 35.0 41.0 34.0 41.0 28 37.68605809809057 40.0 35.0 41.0 34.0 41.0 29 37.65200275876704 40.0 35.0 41.0 34.0 41.0 30 37.507223436015416 40.0 35.0 41.0 33.0 41.0 31 37.40433203594114 40.0 35.0 41.0 33.0 41.0 32 37.12302461186752 40.0 35.0 41.0 33.0 41.0 33 36.87114049937542 40.0 35.0 41.0 32.0 41.0 34 36.632114556354566 40.0 35.0 41.0 31.0 41.0 35 36.50263288623945 40.0 35.0 41.0 31.0 41.0 36 36.44073425645923 40.0 35.0 41.0 31.0 41.0 37 36.401003188015764 40.0 35.0 41.0 30.0 41.0 38 36.35404144902792 40.0 35.0 41.0 30.0 41.0 39 36.316345694731815 40.0 35.0 41.0 30.0 41.0 40 36.247678439656795 40.0 35.0 41.0 30.0 41.0 41 36.20587250830765 40.0 35.0 41.0 30.0 41.0 42 36.09634945668687 39.0 35.0 41.0 30.0 41.0 43 35.9831888839051 39.0 35.0 41.0 29.0 41.0 44 35.82436492893281 39.0 35.0 41.0 28.0 41.0 45 35.74100000482302 39.0 35.0 41.0 28.0 41.0 46 35.69544562286883 39.0 35.0 41.0 28.0 41.0 47 35.59472168767092 39.0 35.0 41.0 27.0 41.0 48 35.534623973299766 38.0 35.0 41.0 27.0 41.0 49 35.446247932130476 38.0 35.0 40.0 27.0 41.0 50 35.277820381114985 38.0 35.0 40.0 26.0 41.0 51 35.155873231760545 38.0 35.0 40.0 26.0 41.0 52 34.78215000554647 37.0 35.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 4.0 15 10.0 16 23.0 17 81.0 18 176.0 19 418.0 20 696.0 21 1161.0 22 1973.0 23 3204.0 24 6078.0 25 11452.0 26 15784.0 27 17038.0 28 15713.0 29 14671.0 30 15462.0 31 17999.0 32 21856.0 33 28844.0 34 51795.0 35 92848.0 36 93092.0 37 77555.0 38 134993.0 39 412839.0 40 928.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.364842118463 19.174877857036062 25.796401062993457 28.663878961507482 2 33.14041256107148 20.542493211600327 26.096103482702244 20.22099074462595 3 21.653331018284067 21.795224246282658 36.32177255605554 20.229672179377733 4 22.58234099711101 24.28679602004447 34.34250189303508 18.788361089809445 5 20.741683908960688 30.43604917550485 30.443380164850797 18.378886750683662 6 76.15711467693005 1.518672319245294 19.15384949285952 3.1703635109651342 7 76.6987397450552 1.2099026232402008 16.430386950838965 5.660970680865636 8 67.0010948253826 3.418749005252268 22.552245356638164 7.027910812726984 9 32.15304404863532 26.790521802458777 26.02607324237119 15.030360906534709 10 23.04264995972779 20.294686479629977 43.77594181509509 12.886721745547147 11 21.584265381814323 17.75006149349616 40.91347985665987 19.752193268029654 12 17.71977293225105 21.80390568103444 42.58320914058619 17.89311224612832 13 14.70326373716474 25.178186448280353 40.99508534332663 19.123464471228278 14 13.21941361731271 23.093195202060393 44.31004297310202 19.377348207524875 15 14.28848407680176 20.29487940040224 45.5435783909443 19.8730581318517 16 14.699598242491765 24.014584810382996 38.94028619796565 22.34553074915959 17 15.07106718948196 22.21762427714998 41.74236395468291 20.968944578685146 18 16.97394122668673 26.85553610271102 39.36230038728845 16.8082222833138 19 17.266891419366353 23.782886962896512 37.01889176662374 21.931329851113393 20 15.076083129560768 28.164985844438334 36.48971008830949 20.26922093769141 21 15.43250425631454 22.95718605761579 37.543250425631456 24.06705926043822 22 13.298993435870724 25.134393432976914 35.58510458717366 25.981508543978705 23 12.633223850795074 22.442087595676647 43.598551165000316 21.326137388527965 24 16.690444151847938 22.491089471831156 39.19677436468778 21.621692011633122 25 14.995056405210791 25.5155084185802 38.302104283323445 21.187330892885566 26 16.12547567027911 23.29923458683605 37.401935959949654 23.173353782935195 27 19.650234639889263 23.467365039862255 38.49087725898166 18.391523061266817 28 16.30720703774977 23.19939808719054 35.52906110283159 24.96433377222809 29 20.31571484380652 22.567389637260717 34.482948215241706 22.633947303691055 30 19.818558013687728 25.06812514770497 32.83472959742258 22.278587241184727 31 23.67407964734083 22.064831025518593 31.731705082015445 22.529384245125133 32 19.352847269447622 24.48569733624644 31.209757932661002 24.95169746164494 33 18.827138165034075 23.98053429407878 34.60670689064768 22.585620650239463 34 18.37444957292164 22.761660854928405 32.14397677233902 26.719912799810935 35 19.908652014334013 21.629891144454252 33.14176300647731 25.31969383473442 36 16.979535929082324 25.55081291990412 33.055045119345614 24.414606031667947 37 16.25685471618943 22.861690275346174 35.43896710218531 25.442487906279087 38 15.713589821500054 24.373803288334564 31.415893777822795 28.496713112342587 39 20.207486290567623 22.92419660555901 33.333236872947204 23.535080230926162 40 16.211614795094025 22.098399239892156 36.40173821615808 25.288247748855742 41 20.20198804855816 24.06812032468566 30.33901002705714 25.390881599699043 42 19.984759258991314 21.45905980061638 34.097396051876395 24.458784888515908 43 22.00531496727581 22.756355533691202 33.43316983297884 21.805159666054145 44 17.157698262266145 24.058377825686435 34.0237967772585 24.76012713478892 45 19.496283863624306 21.881170450325314 33.77338561486262 24.849160071187764 46 21.687960296905068 21.2326672743671 32.01047559793382 25.068896830794014 47 17.569873492203588 20.580209222577516 35.40028648734681 26.449630797872082 48 18.705115776578456 18.96951369496332 32.84148182445175 29.483888704006482 49 19.645218699810453 19.038772252205323 36.24643699448729 25.06957205349693 50 18.550007475679926 18.35438581260641 36.659769749058306 26.43583696265536 51 16.691505216095383 18.063557748421665 35.85123879250889 29.393698242974065 52 16.09354728246977 18.30451579297672 41.112574093634095 24.48936283091941 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 297.0 1 1346.0 2 2395.0 3 32572.0 4 62749.0 5 35068.0 6 7387.0 7 7144.5 8 6902.0 9 7183.0 10 7464.0 11 7570.0 12 7676.0 13 7602.0 14 7140.0 15 6752.0 16 6296.5 17 5841.0 18 5428.0 19 5015.0 20 4866.5 21 4718.0 22 4793.0 23 4868.0 24 5135.5 25 5403.0 26 6572.5 27 7742.0 28 8142.0 29 8542.0 30 9634.0 31 10726.0 32 12419.5 33 14113.0 34 17476.0 35 20839.0 36 21968.0 37 23097.0 38 24943.5 39 28914.0 40 31038.0 41 35779.5 42 40521.0 43 47619.5 44 54718.0 45 61556.0 46 68394.0 47 79756.0 48 91118.0 49 109373.5 50 127629.0 51 129404.5 52 131180.0 53 114466.5 54 97753.0 55 77117.0 56 56481.0 57 44170.5 58 31860.0 59 25683.5 60 19507.0 61 15636.5 62 11766.0 63 9892.0 64 6662.5 65 5307.0 66 4449.5 67 3592.0 68 3122.5 69 2653.0 70 2399.0 71 2145.0 72 2375.0 73 2605.0 74 2100.5 75 1596.0 76 1345.0 77 1094.0 78 789.0 79 484.0 80 359.5 81 235.0 82 156.5 83 78.0 84 57.5 85 37.0 86 34.0 87 31.0 88 17.0 89 3.5 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1036695.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.48028953131004 #Duplication Level Percentage of deduplicated Percentage of total 1 73.93920395558095 24.755059561474347 2 11.559458041595667 7.740280041153061 3 4.4823150427307965 4.502076162035202 4 2.1881567530172563 2.9304048652363606 5 1.3294742092298077 2.2255590724711714 6 0.8500778324468831 1.7076511172682065 7 0.6250139941396425 1.4647954639441023 8 0.46233437999451305 1.2383271121996011 9 0.36353346151743443 1.0954084991330755 >10 3.6887260274716684 27.200970375474203 >50 0.3777778284717154 8.404016050656072 >100 0.12380429111898135 7.030042171145107 >500 0.006074509610846177 1.4220848496998886 >1k 0.003181885986633712 1.857503910190947 >5k 5.785247248424931E-4 1.1093695146630498 >10k+ 2.8926236242124653E-4 5.316451233255591 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54896 5.295289357043297 No Hit CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT 6205 0.5985366959423939 No Hit CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCTT 5250 0.5064170271873598 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT 3506 0.33819011377502545 No Hit CGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC 3332 0.32140600658824436 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG 1943 0.18742253025238859 No Hit CGTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT 1690 0.16301805256126442 No Hit TCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT 1687 0.16272867140287162 No Hit ACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC 1397 0.13475515942490318 No Hit GCCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC 1326 0.12790647200960745 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 1171 0.11295511215931398 No Hit AGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC 1061 0.10234446968491215 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT 1044 0.10070464312068642 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5204037831763441 0.0 2 0.0 0.0 0.0 1.7401453658018993 0.0 3 0.0 0.0 0.0 2.9510125929034094 0.0 4 0.0 0.0 0.0 3.704175287813677 0.0 5 0.0 0.0 0.0 7.260573264074776 0.0 6 0.0 0.0 0.0 8.248520538827718 0.0 7 9.646038613092568E-5 0.0 0.0 11.464509812432778 0.0 8 9.646038613092568E-5 0.0 0.0 15.268714520664226 0.0 9 9.646038613092568E-5 0.0 0.0 18.225997038666147 0.0 10 9.646038613092568E-5 0.0 0.0 20.032121308581598 0.0 11 9.646038613092568E-5 0.0 0.0 21.720949748961846 0.0 12 9.646038613092568E-5 0.0 0.0 22.961912616536203 0.0 13 9.646038613092568E-5 0.0 0.0 23.509228847443076 0.0 14 9.646038613092568E-5 0.0 0.0 23.907996083708323 0.0 15 9.646038613092568E-5 0.0 0.0 25.144328852748398 0.0 16 9.646038613092568E-5 0.0 0.0 26.681039264200173 0.0 17 9.646038613092568E-5 0.0 0.0 28.312473774832522 0.0 18 9.646038613092568E-5 0.0 0.0 29.24727137682732 0.0 19 9.646038613092568E-5 0.0 0.0 30.21611949512634 0.0 20 9.646038613092568E-5 0.0 0.0 31.27178196094319 0.0 21 9.646038613092568E-5 0.0 0.0 32.34500021703587 0.0 22 8.681434751783312E-4 0.0 0.0 33.477348689826805 0.0 23 8.681434751783312E-4 0.0 0.0 34.375684265864116 0.0 24 0.0012539850197020338 0.0 0.0 35.08408934160963 0.0 25 0.0013504454058329595 0.0 0.0 35.77165897395087 0.0 26 0.0013504454058329595 0.0 0.0 36.4304834112251 0.0 27 0.0013504454058329595 0.0 0.0 37.090079531588366 0.0 28 0.0013504454058329595 0.0 0.0 37.79443327111638 0.0 29 0.0013504454058329595 0.0 0.0 38.61945895369419 0.0 30 0.0013504454058329595 0.0 0.0 39.34387645353744 0.0 31 0.0013504454058329595 0.0 0.0 39.934985699747756 0.0 32 0.0014469057919638852 0.0 0.0 40.55223571059955 0.0 33 0.0014469057919638852 0.0 0.0 41.151833470789384 0.0 34 0.0014469057919638852 0.0 0.0 41.83525530652699 0.0 35 0.0014469057919638852 0.0 0.0 42.44247343722117 0.0 36 0.0014469057919638852 0.0 0.0 43.030881792619816 0.0 37 0.0014469057919638852 0.0 0.0 43.62748928083959 0.0 38 0.0017362869503566624 0.0 0.0 44.200078132912765 0.0 39 0.0017362869503566624 0.0 0.0 44.77459619270856 0.0 40 0.0017362869503566624 0.0 0.0 45.37409749251226 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTGCGG 105 0.0 46.000004 1 CTAACGG 105 0.0 46.000004 1 ACCGGCG 60 0.0 46.0 19 AGATCCG 20 6.311168E-4 46.0 24 GACCGAC 20 6.311168E-4 46.0 8 ACTACGG 50 1.6370905E-11 46.0 1 AATTCGG 40 5.6097633E-9 46.0 1 TCATCGG 40 5.6097633E-9 46.0 1 TCGGTTG 20 6.311168E-4 46.0 28 AGTACGG 45 3.092282E-10 46.0 1 ACGGTGA 20 6.311168E-4 46.0 26 GCGAGTA 30 1.8612245E-6 46.0 21 TCACGAC 140 0.0 45.999996 24 CTCGTCC 35 1.0194344E-7 45.999996 36 CCGTGTA 35 1.0194344E-7 45.999996 24 CATCCGG 35 1.0194344E-7 45.999996 1 CGTTTTT 12445 0.0 45.519485 1 TTCACGG 225 0.0 44.97778 1 CGGTCTA 135 0.0 44.2963 30 ATCGCGG 110 0.0 43.909092 1 >>END_MODULE