SRR1043211_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043211_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1010094
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50523	5.001811712573286	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	5801	0.5743029856627205	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	5200	0.5148035727367948	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	3624	0.35877848992272005	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG	3015	0.2984870715002762	No Hit
TCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1683	0.16661815633000493	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC	1665	0.1648361439628391	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	1529	0.15137205052203062	No Hit
ACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG	1399	0.13850196120361075	No Hit
GCCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG	1294	0.1281068890618101	No Hit
AGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG	1167	0.11553380180458453	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT	1056	0.10454472554039525	No Hit
TCCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG	1037	0.10266371248616465	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	1017	0.10068369874486928	No Hit
ACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1011	0.10008969462248068	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTGA	20	7.03288E-4	45.0	18
GCAACCG	20	7.03288E-4	45.0	35
GGCAACG	20	7.03288E-4	45.0	7
CAACCGG	40	6.8139343E-9	45.0	1
GCACGGA	20	7.03288E-4	45.0	2
TGTATCG	25	3.890469E-5	45.0	11
CGTTATC	20	7.03288E-4	45.0	16
CCGTAGA	20	7.03288E-4	45.0	39
CGTAGAC	20	7.03288E-4	45.0	40
GTCACGG	55	1.8189894E-12	45.0	1
CAGGCGA	20	7.03288E-4	45.0	4
TTAACGG	95	0.0	45.0	1
ACGTCCG	20	7.03288E-4	45.0	39
TCATCGG	40	6.8139343E-9	45.0	1
CGTAAGG	20	7.03288E-4	45.0	1
ACGTATA	20	7.03288E-4	45.0	25
TCTCACG	95	0.0	45.0	22
CGGTCTA	90	0.0	45.0	30
GCGGAAT	20	7.03288E-4	45.0	4
CGACTCA	25	3.890469E-5	45.0	21