##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043210_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 726493 Sequences flagged as poor quality 0 Sequence length 52 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.225713117676285 33.0 31.0 34.0 31.0 34.0 2 32.55722216181023 34.0 31.0 34.0 31.0 34.0 3 32.640139684759525 34.0 31.0 34.0 31.0 34.0 4 36.163704261431285 37.0 35.0 37.0 35.0 37.0 5 36.059269669494405 37.0 35.0 37.0 35.0 37.0 6 36.30366844553217 37.0 37.0 37.0 35.0 37.0 7 36.230214193392094 37.0 37.0 37.0 35.0 37.0 8 36.20338255151805 37.0 37.0 37.0 35.0 37.0 9 37.717876152970504 39.0 38.0 39.0 35.0 39.0 10 37.517663625114075 39.0 37.0 39.0 35.0 39.0 11 37.105139347522964 39.0 37.0 39.0 34.0 39.0 12 37.07511565837524 39.0 37.0 39.0 33.0 39.0 13 37.09472906139495 39.0 37.0 39.0 33.0 39.0 14 38.476227575489375 40.0 37.0 41.0 34.0 41.0 15 38.591306454432456 40.0 37.0 41.0 35.0 41.0 16 38.61203342633721 40.0 37.0 41.0 35.0 41.0 17 38.59858525821997 40.0 37.0 41.0 35.0 41.0 18 38.31111104993441 40.0 37.0 41.0 34.0 41.0 19 38.02117157357332 40.0 37.0 41.0 34.0 41.0 20 37.71913562828548 39.0 35.0 41.0 34.0 41.0 21 37.6258518664323 39.0 35.0 41.0 34.0 41.0 22 37.577148024826116 39.0 35.0 41.0 34.0 41.0 23 37.55634259380338 39.0 35.0 41.0 34.0 41.0 24 37.478848385325115 39.0 35.0 41.0 34.0 41.0 25 37.369333221379975 39.0 35.0 41.0 33.0 41.0 26 37.328484926902256 39.0 35.0 41.0 33.0 41.0 27 37.335602683026536 39.0 35.0 41.0 33.0 41.0 28 37.3398683813884 39.0 35.0 41.0 33.0 41.0 29 37.30301599602474 39.0 35.0 41.0 33.0 41.0 30 37.26869082014555 39.0 35.0 41.0 33.0 41.0 31 37.14128973025205 39.0 35.0 41.0 33.0 41.0 32 36.95702367400649 39.0 35.0 41.0 33.0 41.0 33 36.76201973040346 39.0 35.0 41.0 32.0 41.0 34 36.55237559068016 39.0 35.0 41.0 31.0 41.0 35 36.41377549405156 39.0 35.0 41.0 31.0 41.0 36 36.323504837624036 39.0 35.0 41.0 31.0 41.0 37 36.26481053499483 39.0 35.0 41.0 31.0 41.0 38 36.22452659557628 39.0 35.0 41.0 31.0 41.0 39 36.18410363210657 39.0 35.0 41.0 30.0 41.0 40 36.143006195517366 39.0 35.0 41.0 30.0 41.0 41 36.120854571207154 39.0 35.0 41.0 30.0 41.0 42 36.03290327642524 39.0 35.0 41.0 30.0 41.0 43 35.92397173819982 39.0 35.0 41.0 30.0 41.0 44 35.76750223333191 38.0 35.0 41.0 30.0 41.0 45 35.68974511798462 38.0 35.0 41.0 29.0 41.0 46 35.64935656640876 38.0 35.0 41.0 28.0 41.0 47 35.57088918957237 38.0 35.0 41.0 28.0 41.0 48 35.52929209228444 38.0 35.0 40.0 28.0 41.0 49 35.462195781652404 38.0 35.0 40.0 28.0 41.0 50 35.318955585256845 38.0 35.0 40.0 27.0 41.0 51 35.22605035423604 38.0 35.0 40.0 27.0 41.0 52 34.89371817760116 37.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 3.0 14 4.0 15 7.0 16 19.0 17 44.0 18 145.0 19 257.0 20 511.0 21 812.0 22 1342.0 23 2287.0 24 4244.0 25 7448.0 26 10578.0 27 11404.0 28 10786.0 29 10496.0 30 11422.0 31 13725.0 32 16914.0 33 22376.0 34 41907.0 35 81090.0 36 70273.0 37 53762.0 38 87964.0 39 265847.0 40 825.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.953735273430024 19.771973026581126 25.242775911123715 28.031515788865136 2 33.305895583302245 20.497513396550275 26.711475540714087 19.485115479433386 3 20.74940845954469 21.759053425153443 37.541311478568964 19.950226636732907 4 22.552866992524358 25.020888019567977 34.614511082694534 17.811733905213124 5 20.209279373648474 29.647223028989956 31.193693538685164 18.94980405867641 6 74.0047047941274 1.785013757875162 20.55092065580811 3.6593607921893256 7 74.8895034088422 1.52664925883663 17.24008352454876 6.343763807772408 8 63.79442059317846 3.361353791433641 24.699618578568547 8.14460703681935 9 36.637104555721805 19.027850233932053 27.827935024838506 16.50711018550764 10 28.999315891550225 18.787379919696402 40.66659967817997 11.546704510573399 11 25.691369359374423 16.203046691434054 39.04029357474883 19.0652903744427 12 18.36301244471729 22.97957447628539 40.809615509027616 17.847797569969703 13 13.612656969853804 25.343258641170664 40.705278646869274 20.338805742106256 14 11.744504076432946 22.21411630944827 45.45425764597869 20.587121968140092 15 12.804252759489767 18.105473831131203 48.185873779926304 20.904399629452726 16 13.65945714549211 24.453091771014996 37.38136499594628 24.50608608754661 17 15.780330987359822 21.265586867320124 41.190899292904405 21.763182852415646 18 17.892395384401503 26.8700455475827 37.78329591613409 17.45426315188171 19 18.096664386305168 22.770074866516264 36.089955443479845 23.043305303698727 20 14.602067741877761 29.512741347817528 35.30343719760548 20.58175371269923 21 15.94949985753476 23.523557694292993 35.65994441790905 24.866998030263197 22 13.357045422323408 26.44939455713957 32.84078442600273 27.35277559453429 23 12.807418653724124 22.374338087221762 44.54468246769067 20.27356079136344 24 16.498576035832414 21.967038911593093 39.473745789704786 22.060639262869707 25 13.177277688842151 26.157168754550973 37.764713493454174 22.900840063152707 26 14.690850428015137 23.543241297576163 36.55162541139419 25.21428286301451 27 18.979811230115086 22.37571456297583 38.40491236667112 20.239561840237965 28 13.303225220339357 21.90124337054865 36.6532093220444 28.142322087067594 29 15.594782055711478 23.51846473400294 33.93453206018503 26.952221150100552 30 20.020013957464148 22.212051595817165 30.483019106859942 27.284915339858745 31 18.629360503129416 20.551884188835956 33.85359528584584 26.96516002218879 32 15.602490319934258 25.26356069501014 29.836901387900504 29.2970475971551 33 13.209624869062745 21.057188438154256 33.101075991096955 32.632110701686045 34 16.965476611612225 22.804624407943365 34.41161855654494 25.818280423899477 35 17.2389823439455 23.09987845719092 30.97001622864914 28.69112297021444 36 17.153227904467077 27.259863481134712 30.178680317635543 25.40822829676267 37 18.085652580272622 22.88569882985796 34.369360750895055 24.65928783897436 38 15.932569205759725 25.910641946997426 30.665677439424744 27.49111140781811 39 20.714996565692996 24.229965051280605 31.426455588698033 23.62858279432837 40 15.20372529398081 20.57693604755999 36.36814119337695 27.85119746508225 41 18.091984368741336 22.877852918059773 30.72101176473827 28.30915094846062 42 17.725428875433074 20.816993419069423 35.82443327052015 25.63314443497735 43 20.240938315992032 22.957275569069488 33.67465343781702 23.12713267712146 44 15.331324596382897 25.69522349148581 33.0025203271057 25.970931585025596 45 18.857167240427643 21.540193780256658 33.024956881897005 26.57768209741869 46 21.715419143749493 20.48966748475209 32.14593946534929 25.64897390614913 47 15.217627699096894 19.608172411847054 37.23958799327729 27.93461189577876 48 17.160247930812822 18.069410166374624 33.47575269135422 31.294589211458334 49 18.915254517249306 18.534521323674145 37.096159219703424 25.45406493937313 50 17.080137041926076 18.1217162450292 36.93662567980696 27.861521033237764 51 15.438276762473969 17.110419508515566 36.50840407271646 30.942899656294003 52 15.360230587218322 17.275321303852895 42.793530013365576 24.570918095563204 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 209.0 1 1228.5 2 2248.0 3 25425.0 4 48602.0 5 26876.5 6 5151.0 7 4887.5 8 4624.0 9 4843.0 10 5062.0 11 5215.5 12 5369.0 13 5286.0 14 4846.0 15 4489.0 16 4117.0 17 3745.0 18 3435.0 19 3125.0 20 2959.0 21 2793.0 22 2609.5 23 2426.0 24 2370.5 25 2315.0 26 2779.0 27 3243.0 28 3051.5 29 2860.0 30 3417.5 31 3975.0 32 5222.0 33 6469.0 34 7569.5 35 8670.0 36 10403.0 37 12136.0 38 12752.0 39 16108.5 40 18849.0 41 22047.0 42 25245.0 43 32264.5 44 39284.0 45 44551.0 46 49818.0 47 58216.0 48 66614.0 49 82426.0 50 98238.0 51 99952.5 52 101667.0 53 87989.0 54 74311.0 55 59508.5 56 44706.0 57 34716.5 58 24727.0 59 19257.0 60 13787.0 61 11012.5 62 8238.0 63 6698.0 64 4096.0 65 3034.0 66 2430.5 67 1827.0 68 1557.0 69 1287.0 70 1186.5 71 1086.0 72 1188.0 73 1290.0 74 961.5 75 633.0 76 485.5 77 338.0 78 231.0 79 124.0 80 103.5 81 83.0 82 57.0 83 31.0 84 30.0 85 29.0 86 16.5 87 4.0 88 3.5 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 726493.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.15517650845737 #Duplication Level Percentage of deduplicated Percentage of total 1 74.41020005971097 24.670833170093427 2 11.562768867989243 7.667312854893585 3 4.481375254684732 4.457423627091163 4 2.1323781144470337 2.827974910690517 5 1.2447732369351758 2.06353381917948 6 0.8178903161880626 1.6270378678663937 7 0.5895881474416969 1.3683529367006697 8 0.41893253264888514 1.1111825652087097 9 0.3282491511852549 0.9794842691668592 >10 3.417126519537618 25.20018537727704 >50 0.4490977165537439 9.891314762396005 >100 0.13514514611331263 7.627496343720303 >500 0.008316624376203854 1.7324690740942326 >1k 0.003742480969291734 2.7284388808152844 >5k 0.0 0.0 >10k+ 4.158312188101927E-4 6.046959540806386 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43860 6.037222657341503 No Hit CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 4274 0.5883057372885905 No Hit CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT 3926 0.54040438104703 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 3323 0.45740289307673987 No Hit CGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1931 0.265797468110498 No Hit TCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 1576 0.21693257884109002 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCG 1343 0.18486069377130956 No Hit ACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1284 0.17673948682230936 No Hit GCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1129 0.155404112634258 No Hit AGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1004 0.13819816570841012 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT 922 0.1269110645250539 No Hit TCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 904 0.12443340816773182 No Hit ACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 886 0.12195575181040974 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.555683261917183 0.0 2 0.0 0.0 0.0 1.973315641031641 0.0 3 0.0 0.0 0.0 3.343872549356979 0.0 4 0.0 0.0 0.0 4.217797005614645 0.0 5 0.0 0.0 0.0 8.714330351428025 0.0 6 0.0 0.0 0.0 9.890804178429798 0.0 7 0.0 0.0 0.0 13.613895798032466 0.0 8 0.0 0.0 0.0 17.997420484436876 0.0 9 0.0 0.0 0.0 21.064070816924595 0.0 10 0.0 0.0 0.0 23.06147478365242 0.0 11 0.0 0.0 0.0 24.97973139452135 0.0 12 0.0 0.0 0.0 26.326475272301316 0.0 13 0.0 0.0 0.0 26.88257147694472 0.0 14 0.0 0.0 0.0 27.316987224928525 0.0 15 0.0 0.0 0.0 28.581555500190643 0.0 16 0.0 0.0 0.0 30.10737887357483 0.0 17 0.0 0.0 0.0 31.7667203951036 0.0 18 0.0 0.0 0.0 32.67478145006215 0.0 19 0.0 0.0 0.0 33.635561526401496 0.0 20 0.0 0.0 0.0 34.749681001743994 0.0 21 0.001514123329474613 0.0 0.0 35.83916156108868 0.0 22 0.0017894184802881789 0.0 0.0 36.90551732776503 0.0 23 0.002064713631101745 0.0 0.0 37.74420400471856 0.0 24 0.002340008781915311 0.0 0.0 38.46299964349278 0.0 25 0.002340008781915311 0.0 0.0 39.140913952371186 0.0 26 0.002340008781915311 0.0 0.0 39.81910355640041 0.0 27 0.002615303932728877 0.0 0.0 40.44939180418807 0.0 28 0.002615303932728877 0.0 0.0 41.134876729713845 0.0 29 0.002615303932728877 0.0 0.0 41.89771959261824 0.0 30 0.002615303932728877 0.0 0.0 42.56627386636898 0.0 31 0.002615303932728877 0.0 0.0 43.15223959487565 0.0 32 0.002615303932728877 0.0 0.0 43.75761363151469 0.0 33 0.002615303932728877 0.0 0.0 44.33779816185428 0.0 34 0.002615303932728877 0.0 0.0 45.066779721208604 0.0 35 0.002615303932728877 0.0 0.0 45.60924881588673 0.0 36 0.002615303932728877 0.0 0.0 46.14786377845348 0.0 37 0.002615303932728877 0.0 0.0 46.68689168374644 0.0 38 0.002615303932728877 0.0 0.0 47.20885128968896 0.0 39 0.002615303932728877 0.0 0.0 47.74677801437866 0.0 40 0.002615303932728877 0.0 0.0 48.26433289790817 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCGG 35 1.0188705E-7 46.000004 1 GCGATAT 35 1.0188705E-7 46.000004 8 CGTTTTC 70 0.0 46.000004 1 TTCTCCG 35 1.0188705E-7 46.000004 46 TCACGAC 65 0.0 46.0 24 ACAACGC 20 6.3099124E-4 46.0 34 CGGGTCG 20 6.3099124E-4 46.0 5 GCGACCG 20 6.3099124E-4 46.0 14 CTCCGTT 20 6.3099124E-4 46.0 21 CGACGGT 65 0.0 46.0 27 GCAACGC 20 6.3099124E-4 46.0 12 CATGAGT 30 1.8604496E-6 46.0 34 ATGGACG 30 1.8604496E-6 46.0 11 CGGTTGA 25 3.4159057E-5 46.0 26 CTATAAG 20 6.3099124E-4 46.0 33 TCGGGTA 25 3.4159057E-5 46.0 4 CGACCGT 20 6.3099124E-4 46.0 15 CGCGATG 20 6.3099124E-4 46.0 46 TAACGTA 20 6.3099124E-4 46.0 28 CGACATC 25 3.4159057E-5 46.0 10 >>END_MODULE