SRR1043209_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043209_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	709014
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40446	5.704541800302955	No Hit
CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	4138	0.5836274036901951	No Hit
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT	3785	0.5338399523845792	No Hit
GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	3360	0.47389755350388	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	1893	0.266990496661561	No Hit
TCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	1609	0.2269348701153997	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	1283	0.1809555241504399	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	1276	0.17996823758064015	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	1208	0.1703774537597283	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	931	0.13130911378336677	No Hit
ACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	912	0.12862933595105316	No Hit
TCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	880	0.12411602591768287	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	822	0.11593565148219921	No Hit
TGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT	715	0.10084427105811733	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCC	45	3.8380676E-10	45.000004	4
CGGGTAT	120	0.0	45.000004	5
ATTAGTC	60	0.0	45.000004	43
CAAGTCG	30	2.164321E-6	45.000004	40
GGCGTAC	30	2.164321E-6	45.000004	7
TCTACGG	30	2.164321E-6	45.000004	1
CTCGCGG	45	3.8380676E-10	45.000004	1
GCGATAT	45	3.8380676E-10	45.000004	8
CTCTATT	30	2.164321E-6	45.000004	24
TGTGTCC	30	2.164321E-6	45.000004	11
TTTAGTG	25	3.8892886E-5	45.0	12
GTGTTCG	20	7.031456E-4	45.0	8
CGGGTTC	35	1.2110468E-7	45.0	5
CTTCGAA	25	3.8892886E-5	45.0	23
CGGAATC	20	7.031456E-4	45.0	5
AGCGTAT	20	7.031456E-4	45.0	39
AATCCGG	25	3.8892886E-5	45.0	1
GCCTTAC	25	3.8892886E-5	45.0	19
ATCTAGT	35	1.2110468E-7	45.0	11
CGCGGAT	25	3.8892886E-5	45.0	22