##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043209_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 709014 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17635899996333 33.0 31.0 34.0 30.0 34.0 2 32.473003353953516 34.0 31.0 34.0 31.0 34.0 3 32.543646528841464 34.0 31.0 34.0 31.0 34.0 4 36.11567895697405 37.0 35.0 37.0 35.0 37.0 5 36.07159096999495 37.0 35.0 37.0 35.0 37.0 6 36.30519143486588 37.0 37.0 37.0 35.0 37.0 7 36.24943654145052 37.0 37.0 37.0 35.0 37.0 8 36.148724848874636 37.0 37.0 37.0 35.0 37.0 9 37.671969805955875 39.0 38.0 39.0 35.0 39.0 10 37.46248875198515 39.0 37.0 39.0 35.0 39.0 11 37.09925756049951 39.0 35.0 39.0 34.0 39.0 12 37.06550223267806 39.0 37.0 39.0 33.0 39.0 13 37.09284301861458 39.0 37.0 39.0 33.0 39.0 14 38.47523744242004 40.0 37.0 41.0 34.0 41.0 15 38.602886543848214 40.0 38.0 41.0 35.0 41.0 16 38.65378398734016 40.0 38.0 41.0 35.0 41.0 17 38.62450247808929 40.0 37.0 41.0 35.0 41.0 18 38.37564702530557 40.0 37.0 41.0 35.0 41.0 19 38.10468763663341 40.0 37.0 41.0 34.0 41.0 20 37.83120643598011 40.0 35.0 41.0 34.0 41.0 21 37.735851478250076 39.0 35.0 41.0 34.0 41.0 22 37.7059310535476 39.0 35.0 41.0 34.0 41.0 23 37.66026481846621 39.0 35.0 41.0 34.0 41.0 24 37.57606478856553 39.0 35.0 41.0 34.0 41.0 25 37.531566372455266 39.0 35.0 41.0 34.0 41.0 26 37.52669199761923 39.0 35.0 41.0 34.0 41.0 27 37.51220145159334 39.0 35.0 41.0 34.0 41.0 28 37.4649231185844 39.0 35.0 41.0 34.0 41.0 29 37.450274606707346 39.0 35.0 41.0 34.0 41.0 30 37.36939468049996 39.0 35.0 41.0 33.0 41.0 31 37.23400102113639 39.0 35.0 41.0 33.0 41.0 32 37.066826607090974 39.0 35.0 41.0 33.0 41.0 33 36.84380844383891 39.0 35.0 41.0 33.0 41.0 34 36.58217891325136 39.0 35.0 41.0 32.0 41.0 35 36.43583483541933 39.0 35.0 41.0 31.0 41.0 36 36.32337020143467 39.0 35.0 41.0 31.0 41.0 37 36.225298795228305 39.0 35.0 41.0 31.0 41.0 38 36.177040227696494 39.0 35.0 41.0 30.0 41.0 39 36.08848767443238 39.0 35.0 41.0 30.0 41.0 40 36.0235876865619 39.0 35.0 41.0 30.0 41.0 41 35.97034755308076 39.0 35.0 41.0 30.0 41.0 42 35.86867255089462 39.0 35.0 41.0 30.0 41.0 43 35.743045976525146 38.0 35.0 41.0 29.0 41.0 44 35.64781654523042 38.0 35.0 40.0 29.0 41.0 45 35.59977800156273 38.0 35.0 40.0 28.0 41.0 46 35.49735266158355 38.0 35.0 40.0 28.0 41.0 47 35.36812108082492 38.0 35.0 40.0 27.0 41.0 48 35.36246816000813 38.0 35.0 40.0 27.0 41.0 49 35.27398330639451 38.0 35.0 40.0 27.0 41.0 50 35.15469229098438 38.0 35.0 40.0 26.0 41.0 51 34.751134674350574 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 1.0 14 3.0 15 9.0 16 13.0 17 47.0 18 105.0 19 228.0 20 443.0 21 722.0 22 1124.0 23 1980.0 24 3405.0 25 6246.0 26 9800.0 27 11700.0 28 10989.0 29 10712.0 30 11450.0 31 13427.0 32 16392.0 33 21670.0 34 42094.0 35 79092.0 36 65840.0 37 52884.0 38 92324.0 39 256220.0 40 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.39184275627844 19.80257089422776 25.337722527340784 27.467863822153017 2 32.86676990863368 20.519764066718004 26.947422758930006 19.666043265718308 3 20.863057711131233 21.80267244370351 37.139746182726995 20.19452366243826 4 22.71407898856722 25.14082937713501 34.19819636847791 17.946895265819858 5 20.386339338856494 29.7944751443554 30.687123244392918 19.132062272395185 6 74.51460761000487 1.7460868191601295 20.06899722713515 3.6703083436998423 7 75.43334828367281 1.4710569890016276 16.699811287224232 6.395783440101324 8 64.02214906898877 3.302050453164536 24.33125438989921 8.344546087947489 9 36.93001830711382 18.98269991847834 27.379713235563756 16.707568538844082 10 29.296036467545072 18.713875889615718 40.287497849125685 11.702589793713523 11 25.86493355561385 16.14961058596868 38.768204859142415 19.21725099927505 12 18.664793643002817 22.772610978062495 40.62472673318157 17.937868645753117 13 13.602270194946787 25.48130220277738 40.52275413461511 20.393673467660722 14 11.910484137125641 22.10661566626329 45.21363470961081 20.769265487000258 15 12.95305875483418 18.01741573509127 47.95152140860406 21.078004101470494 16 13.673213787033825 24.455370415816898 37.27768422062188 24.593731576527404 17 16.007300278978974 21.23836764859368 40.81992739212484 21.934404680302507 18 18.039418121503946 27.03049587173173 37.595731537035945 17.334354469728382 19 18.297805120914397 22.744261749415383 35.76854617821369 23.18938695145653 20 14.673899245995143 29.68601466261597 34.80960883706105 20.830477254327842 21 15.92944568090334 23.48726541365897 35.41396925871704 25.169319646720655 22 13.450933267890338 26.508080235369118 32.36085606208058 27.680130434659965 23 12.949814813247693 22.337922805473518 44.180509834784644 20.531752546494143 24 16.614622560344365 21.84286911118821 39.277926811036174 22.26458151743125 25 13.163350794201525 26.158862871537092 37.533814565015646 23.14397176924574 26 14.791527388739855 23.28642311717399 36.388139021232305 25.533910472853847 27 19.26026848553061 22.166699106082532 38.09515750041607 20.47787490797079 28 13.375476365769929 21.938917990335874 36.26092009466667 28.42468554922752 29 15.741861232641385 23.499959098127825 33.49200438919401 27.26617528003678 30 20.210320247555057 22.17657197178053 29.900537930139603 27.712569850524815 31 18.696809936052038 20.521879680796147 33.41485499581108 27.36645538734073 32 15.752016180216469 25.14449644153712 29.296882713176327 29.806604665070086 33 13.185353180614204 20.870109758058376 32.58863717782724 33.355899883500186 34 17.11729246531098 22.556254178337802 34.12767589920651 26.19877745714471 35 17.25353801194335 22.965837063866157 30.773440298781125 29.007184625409373 36 17.243806187183893 27.336131585554025 29.805617378500283 25.614444848761803 37 18.343220303125186 22.614222004078904 34.08592778139783 24.956629911398082 38 16.17062568581156 25.792156431325758 30.17486255560539 27.862355327257287 39 20.919474086548362 24.047480021551053 31.13365885581949 23.899387036081094 40 15.283196100500133 20.30566392201 36.16106311017836 28.250076867311506 41 18.172842849365455 22.748069854756043 30.422530443686586 28.656556852191915 42 17.961704564366855 20.527662359276402 35.58702649030908 25.923606586047665 43 20.511442651343977 22.793061914151203 33.411470013286056 23.28402542121876 44 15.500681227733162 25.43405348836553 32.89638850572768 26.168876778173633 45 19.067465522542573 21.219327121890398 32.858025370444025 26.855181985123 46 21.901824223499116 20.278866143686866 31.898664906475755 25.920644726338267 47 15.340176639671432 19.40173254688906 37.14129763305097 28.116793180388537 48 17.36919158154846 17.73053846609517 33.168033353361146 31.73223659899522 49 19.122471488574273 18.209513493386588 36.910836739471996 25.75717827856714 50 17.28033579026648 17.796686666271754 36.86415218881432 28.05882535464744 51 15.773595443813521 16.91630912788746 36.08024665239332 31.229848775905694 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 210.0 1 1160.0 2 2110.0 3 23567.5 4 45025.0 5 25140.0 6 5255.0 7 4933.0 8 4611.0 9 4811.0 10 5011.0 11 4993.0 12 4975.0 13 4883.0 14 4791.0 15 4426.0 16 4061.0 17 3647.5 18 3234.0 19 2955.5 20 2677.0 21 2523.5 22 2370.0 23 2239.0 24 2108.0 25 2049.0 26 2586.5 27 3183.0 28 3065.0 29 2947.0 30 3730.0 31 4513.0 32 5491.5 33 6470.0 34 8162.0 35 9854.0 36 11116.0 37 12378.0 38 13657.0 39 14936.0 40 18319.0 41 21702.0 42 26533.5 43 31365.0 44 36246.5 45 41128.0 46 45330.5 47 49533.0 48 62151.5 49 74770.0 50 90834.5 51 106899.0 52 103882.0 53 100865.0 54 81432.5 55 62000.0 56 47229.0 57 32458.0 58 25260.5 59 18063.0 60 13948.5 61 9834.0 62 8161.5 63 6489.0 64 5101.5 65 3714.0 66 2914.0 67 2114.0 68 1776.0 69 1438.0 70 1286.5 71 1135.0 72 1143.0 73 1151.0 74 979.0 75 619.5 76 432.0 77 318.5 78 205.0 79 154.5 80 104.0 81 78.5 82 53.0 83 42.0 84 31.0 85 18.5 86 6.0 87 6.0 88 6.0 89 3.5 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 709014.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.716012307194994 #Duplication Level Percentage of deduplicated Percentage of total 1 73.81933054386917 24.15074126582119 2 11.777776180059277 7.706437409164148 3 4.495477309411829 4.412222729442997 4 2.183900385233193 2.8579404752390807 5 1.3200246151524142 2.1592970777563365 6 0.8596604822435705 1.6874797750253905 7 0.5883224226695379 1.3473294534458764 8 0.4416397851620028 1.155895411736563 9 0.3509873788013069 1.0334616664080303 >10 3.580012668805294 26.078536592531222 >50 0.426075806463461 9.20618095325252 >100 0.14419690899397003 7.984876019394957 >500 0.008686560782769278 1.8362912908609645 >1k 0.0034746243131077107 2.636143003021946 >5k 0.0 0.0 >10k+ 4.3432803913846384E-4 5.747166876898752 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40446 5.704541800302955 No Hit CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 4138 0.5836274036901951 No Hit CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 3785 0.5338399523845792 No Hit GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 3360 0.47389755350388 No Hit CGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG 1893 0.266990496661561 No Hit TCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1609 0.2269348701153997 No Hit ACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG 1283 0.1809555241504399 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC 1276 0.17996823758064015 No Hit GCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG 1208 0.1703774537597283 No Hit AGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG 931 0.13130911378336677 No Hit ACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 912 0.12862933595105316 No Hit TCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG 880 0.12411602591768287 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC 822 0.11593565148219921 No Hit TGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT 715 0.10084427105811733 Illumina Single End Adapter 2 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5478030053003184 0.0 2 0.0 0.0 0.0 1.9978448944590657 0.0 3 0.0 0.0 0.0 3.402189519529939 0.0 4 0.0 0.0 0.0 4.298504683969569 0.0 5 0.0 0.0 0.0 8.895875116711377 0.0 6 0.0 0.0 0.0 10.074554240113736 0.0 7 0.0 0.0 0.0 13.877300025105287 0.0 8 0.0 0.0 0.0 18.40640664359237 0.0 9 0.0 0.0 0.0 21.622845247061413 0.0 10 0.0 0.0 0.0 23.735638506432878 0.0 11 0.0 0.0 0.0 25.690183832759296 0.0 12 0.0 0.0 0.0 27.018366351017047 0.0 13 0.0 0.0 0.0 27.60805851506458 0.0 14 0.0 0.0 0.0 28.0448623017317 0.0 15 0.0 0.0 0.0 29.353863252347626 0.0 16 0.0 0.0 0.0 30.961024747043076 0.0 17 0.0 0.0 0.0 32.6639530390091 0.0 18 0.0 0.0 0.0 33.61654353792732 0.0 19 1.4104093854282144E-4 0.0 0.0 34.632320377312716 0.0 20 1.4104093854282144E-4 0.0 0.0 35.7939335471514 0.0 21 4.231228156284643E-4 0.0 0.0 36.94482760566082 0.0 22 0.0011283275083425715 0.0 0.0 38.05030648195945 0.0 23 0.001269368446885393 0.0 0.0 38.91686200836655 0.0 24 0.002538736893770786 0.0 0.0 39.63024707551614 0.0 25 0.002538736893770786 0.0 0.0 40.30710253958314 0.0 26 0.002538736893770786 0.0 0.0 40.99368982840959 0.0 27 0.002538736893770786 0.0 0.0 41.635144016902345 0.0 28 0.00296185970939925 0.0 0.0 42.318487364142314 0.0 29 0.00296185970939925 0.0 0.0 43.082365087290235 0.0 30 0.00296185970939925 0.0 0.0 43.75724597821764 0.0 31 0.00296185970939925 0.0 0.0 44.346938142265174 0.0 32 0.00296185970939925 0.0 0.0 44.95073440016699 0.0 33 0.00296185970939925 0.0 0.0 45.56101854124178 0.0 34 0.00296185970939925 0.0 0.0 46.29936785451345 0.0 35 0.00296185970939925 0.0 0.0 46.870019491857704 0.0 36 0.00296185970939925 0.0 0.0 47.42106643874451 0.0 37 0.00296185970939925 0.0 0.0 47.938686683196664 0.0 38 0.00296185970939925 0.0 0.0 48.45574276389465 0.0 39 0.00296185970939925 0.0 0.0 48.99339082161988 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGCC 45 3.8380676E-10 45.000004 4 CGGGTAT 120 0.0 45.000004 5 ATTAGTC 60 0.0 45.000004 43 CAAGTCG 30 2.164321E-6 45.000004 40 GGCGTAC 30 2.164321E-6 45.000004 7 TCTACGG 30 2.164321E-6 45.000004 1 CTCGCGG 45 3.8380676E-10 45.000004 1 GCGATAT 45 3.8380676E-10 45.000004 8 CTCTATT 30 2.164321E-6 45.000004 24 TGTGTCC 30 2.164321E-6 45.000004 11 TTTAGTG 25 3.8892886E-5 45.0 12 GTGTTCG 20 7.031456E-4 45.0 8 CGGGTTC 35 1.2110468E-7 45.0 5 CTTCGAA 25 3.8892886E-5 45.0 23 CGGAATC 20 7.031456E-4 45.0 5 AGCGTAT 20 7.031456E-4 45.0 39 AATCCGG 25 3.8892886E-5 45.0 1 GCCTTAC 25 3.8892886E-5 45.0 19 ATCTAGT 35 1.2110468E-7 45.0 11 CGCGGAT 25 3.8892886E-5 45.0 22 >>END_MODULE