##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043206_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1303789 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24569773176488 33.0 31.0 34.0 31.0 34.0 2 32.579212587312824 34.0 31.0 34.0 31.0 34.0 3 32.68073284864345 34.0 31.0 34.0 31.0 34.0 4 36.182373835030056 37.0 35.0 37.0 35.0 37.0 5 36.07915621316026 37.0 35.0 37.0 35.0 37.0 6 36.323496363291916 37.0 37.0 37.0 35.0 37.0 7 36.25249330988373 37.0 37.0 37.0 35.0 37.0 8 36.21892882974162 37.0 37.0 37.0 35.0 37.0 9 37.74104552193645 39.0 38.0 39.0 35.0 39.0 10 37.51118240758282 39.0 37.0 39.0 35.0 39.0 11 37.281012495119995 39.0 37.0 39.0 34.0 39.0 12 37.30657491357881 39.0 37.0 39.0 34.0 39.0 13 37.30681421610399 39.0 37.0 39.0 34.0 39.0 14 38.68265493879761 40.0 38.0 41.0 35.0 41.0 15 38.76190549237645 40.0 38.0 41.0 35.0 41.0 16 38.78361452658367 40.0 38.0 41.0 35.0 41.0 17 38.75101109151864 40.0 38.0 41.0 35.0 41.0 18 38.525275945724346 40.0 38.0 41.0 35.0 41.0 19 38.29233948131178 40.0 37.0 41.0 34.0 41.0 20 37.996013158570904 40.0 35.0 41.0 34.0 41.0 21 37.935359939376696 40.0 35.0 41.0 34.0 41.0 22 37.89107976827539 40.0 35.0 41.0 34.0 41.0 23 37.88053818524316 40.0 35.0 41.0 34.0 41.0 24 37.81444696956333 40.0 35.0 41.0 34.0 41.0 25 37.742618629241385 40.0 35.0 41.0 34.0 41.0 26 37.6729570505657 40.0 35.0 41.0 34.0 41.0 27 37.72184532926723 40.0 35.0 41.0 34.0 41.0 28 37.70161659593692 40.0 35.0 41.0 34.0 41.0 29 37.65248364574329 40.0 35.0 41.0 34.0 41.0 30 37.60260747713012 40.0 35.0 41.0 33.0 41.0 31 37.46573410268073 40.0 35.0 41.0 33.0 41.0 32 37.235499762614964 40.0 35.0 41.0 33.0 41.0 33 36.98738139376847 40.0 35.0 41.0 32.0 41.0 34 36.787299938870476 40.0 35.0 41.0 31.0 41.0 35 36.63516489247877 40.0 35.0 41.0 31.0 41.0 36 36.57049415204454 40.0 35.0 41.0 31.0 41.0 37 36.49901095959546 40.0 35.0 41.0 31.0 41.0 38 36.41818576472113 40.0 35.0 41.0 30.0 41.0 39 36.389636666669226 40.0 35.0 41.0 30.0 41.0 40 36.33352099151013 39.0 35.0 41.0 30.0 41.0 41 36.31927482130928 40.0 35.0 41.0 30.0 41.0 42 36.25729853526913 39.0 35.0 41.0 30.0 41.0 43 36.17146256027624 39.0 35.0 41.0 30.0 41.0 44 36.01152487097222 39.0 35.0 41.0 29.0 41.0 45 35.89779097691421 39.0 35.0 41.0 28.0 41.0 46 35.855894627121415 39.0 35.0 41.0 28.0 41.0 47 35.78013927100167 39.0 35.0 41.0 28.0 41.0 48 35.73246514581731 39.0 35.0 41.0 28.0 41.0 49 35.664496325709145 39.0 35.0 41.0 28.0 41.0 50 35.512487833537485 38.0 35.0 40.0 27.0 41.0 51 35.39532393661858 38.0 35.0 40.0 27.0 41.0 52 35.072663598174245 38.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 11.0 16 36.0 17 89.0 18 225.0 19 454.0 20 854.0 21 1406.0 22 2291.0 23 3819.0 24 7236.0 25 13316.0 26 19023.0 27 20661.0 28 18876.0 29 18507.0 30 19870.0 31 23528.0 32 28835.0 33 37561.0 34 66930.0 35 113072.0 36 110242.0 37 101994.0 38 173658.0 39 520133.0 40 1157.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.685154576392346 20.434288063482665 26.287842588026127 25.59271477209886 2 32.49505863295364 20.95454095716408 26.055212921722763 20.495187488159512 3 21.935604610868783 22.068678290735694 35.812313188713816 20.183403909681704 4 22.84464740843802 24.89122089540562 33.26174710785257 19.002384588303784 5 20.735180309083756 31.059626979518924 29.497871204619763 18.707321506777554 6 76.88015468760666 1.5595314886074356 18.316077218016105 3.2442366057697987 7 77.59614477495975 1.4388831321632565 15.158587777623527 5.806384315253465 8 67.01605858003097 3.5266442652913934 22.03048192613989 7.4268152285377464 9 34.141260587411 25.07292207558125 24.98740210264084 15.79841523436691 10 24.007642340900254 20.309728031146143 42.57567750609953 13.106952121854073 11 22.860294112007388 17.712375238631402 39.073500390017095 20.35383025934411 12 18.915023826708154 21.642382317997775 41.70881944854574 17.73377440674833 13 15.096154362400666 24.184434751328627 40.8091339933072 19.91027689296351 14 13.965526630459376 23.966147896630513 42.38247139682878 19.68585407608133 15 14.535404118304418 21.04780758236187 44.48818021934531 19.928608079988404 16 15.689578605127055 24.586110175802986 37.52179225319434 22.202518965875615 17 16.076834518468864 21.924406479882865 40.03393187087788 21.96482713077039 18 17.977448804983016 27.276729593515515 38.0836929902001 16.66212861130137 19 18.10139524110113 23.911384434137734 35.62930811657408 22.357912208187063 20 15.467763572173105 28.776512150355614 35.47399157378993 20.281732703681346 21 16.190963415092476 23.153439705351094 36.653093406985334 24.0025034725711 22 14.234818670812533 25.471682918018175 34.117867231584256 26.17563117958504 23 13.57443574075253 22.578346649649596 42.1765331660261 21.670684443571776 24 17.35802342250165 22.47963435801345 37.845004061239976 22.317338158244933 25 14.362216585659182 25.74082155931673 37.04441439527408 22.852547459750006 26 15.884548803525725 22.674988054048622 36.45681931662255 24.9836438258031 27 20.08308092797224 22.61362843220797 36.879050214413525 20.42424042540626 28 16.281852354943936 21.89111888503431 34.99615351870587 26.830875241315887 29 17.12945883114522 22.449874941420735 33.59684734262983 26.82381888480421 30 22.398869755765695 23.316349501338024 31.286274082692827 22.998506660203454 31 18.334024907404494 23.62713598596092 30.747306504350014 27.291532602284573 32 18.117425442307 23.872651172850823 33.30462214361373 24.70530124122845 33 16.837310331656425 25.12967972578385 32.09008512880535 25.942924813754374 34 15.926580144486568 24.59838210017112 34.38731267099201 25.087725084350303 35 17.539187705986166 27.2942170857401 33.057956463814314 22.10863874445942 36 16.473524473668668 28.07409787933477 35.061578215493455 20.390799431503105 37 15.368591083373154 30.799155384805367 34.71597014547599 19.11628338634549 38 14.656589371439704 29.12764258633874 33.857549035925295 22.358219006296267 39 19.294226289683376 25.440773008515947 35.74435740752529 19.520643294275377 40 15.302552790367152 23.176142765432136 38.08192890107218 23.439375543128527 41 18.921466587001422 24.700775969117704 31.005477113244552 25.372280330636322 42 19.00115739586697 20.04227677944821 36.36769446589901 24.588871358785816 43 20.74047257646751 22.704133874422933 33.93677964762703 22.618613901482526 44 16.17945848599735 25.62646256411122 33.73958516293664 24.454493786954792 45 18.384186398259228 25.301793465046874 32.40869496521293 23.905325171480968 46 21.03055018871919 22.953484037677878 32.53325499754945 23.482710776053487 47 16.60184278284293 21.810124184204653 36.80856334882408 24.779469684128337 48 17.618571716742508 19.66821318480214 33.20982152786993 29.503393570585423 49 18.91172574703422 20.36978376102268 36.541955791926455 24.176534700016646 50 18.18262004051269 19.812638394709573 36.79076905849029 25.213972506287448 51 16.36177326239138 19.067885984618677 36.059055568040534 28.511285184949404 52 15.44260612721844 18.971474678801556 42.15283301209015 23.433086181889863 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 380.0 1 1682.5 2 2985.0 3 34394.5 4 65804.0 5 37313.5 6 8823.0 7 8545.0 8 8267.0 9 8452.0 10 8637.0 11 8829.0 12 9021.0 13 8843.0 14 8164.0 15 7663.0 16 7362.5 17 7062.0 18 6518.5 19 5975.0 20 5729.5 21 5484.0 22 5319.0 23 5154.0 24 5275.5 25 5397.0 26 6227.0 27 7057.0 28 8195.0 29 9333.0 30 10596.5 31 11860.0 32 13739.0 33 15618.0 34 19051.5 35 22485.0 36 25393.5 37 28302.0 38 31056.0 39 39686.5 40 45563.0 41 57887.5 42 70212.0 43 93826.5 44 117441.0 45 147479.0 46 177517.0 47 180926.0 48 184335.0 49 161434.5 50 138534.0 51 115221.0 52 91908.0 53 74681.5 54 57455.0 55 49191.5 56 40928.0 57 35298.0 58 29668.0 59 26158.0 60 22648.0 61 18764.5 62 14881.0 63 12809.5 64 9219.0 65 7700.0 66 6275.5 67 4851.0 68 3920.0 69 2989.0 70 2779.5 71 2570.0 72 2572.0 73 2574.0 74 2114.5 75 1655.0 76 1339.5 77 1024.0 78 711.0 79 398.0 80 328.0 81 258.0 82 173.5 83 89.0 84 63.5 85 38.0 86 31.0 87 24.0 88 12.0 89 2.5 90 5.0 91 3.0 92 1.0 93 1.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1303789.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.04945456046917 #Duplication Level Percentage of deduplicated Percentage of total 1 72.22953440482686 23.149171808313433 2 12.08675296711624 7.747476800064159 3 4.962168686863508 4.77104399553045 4 2.498316538833785 3.2027872955608805 5 1.4742656796787834 2.362470545546218 6 1.0162528550023753 1.9542209819007414 7 0.6774294664754764 1.519787143261006 8 0.4831329283727302 1.2387317467638577 9 0.4048848787763351 1.16787055721069 >10 3.560643204348141 25.169210973050255 >50 0.44282407286413045 9.448287101246875 >100 0.15032518072252504 8.682672773781833 >500 0.009380291225800749 2.080844377086622 >1k 0.003126763741933583 1.746062309601729 >5k 7.215608635231346E-4 1.4734881924876186 >10k+ 2.4052028784104484E-4 4.285873398593728 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55599 4.264417018397915 No Hit CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCTT 6903 0.5294568369575138 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 6901 0.5293034379029121 No Hit GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 5311 0.4073511894946191 No Hit CGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 2978 0.22841119230182183 No Hit TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 2916 0.22365582160917144 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG 2237 0.1715768425719192 No Hit ACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 2134 0.16367679125993548 No Hit GCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1864 0.14296791888871588 No Hit AGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1708 0.13100279262978903 No Hit TCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 1531 0.11742697629754507 No Hit ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 1529 0.11727357724294345 No Hit CGTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT 1409 0.10806963396684587 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5438763480900667 0.0 2 0.0 0.0 0.0 1.853827574860656 0.0 3 0.0 0.0 0.0 3.1084017429200586 0.0 4 0.0 0.0 0.0 3.926402201583232 0.0 5 0.0 0.0 0.0 7.992857740017748 0.0 6 0.0 0.0 0.0 8.940787197928499 0.0 7 0.0 0.0 0.0 12.211255042035177 0.0 8 0.0 0.0 0.0 16.106210437425073 0.0 9 0.0 0.0 0.0 19.14811369017533 0.0 10 0.0 0.0 0.0 21.065064976004553 0.0 11 0.0 0.0 0.0 22.931701371924444 0.0 12 0.0 0.0 0.0 24.229994270545312 0.0 13 0.0 0.0 0.0 24.80692811490203 0.0 14 0.0 0.0 0.0 25.207529745994176 0.0 15 0.0 0.0 0.0 26.540337431900408 0.0 16 0.0 0.0 0.0 28.199808404580804 0.0 17 0.0 0.0 0.0 29.96389753249951 0.0 18 0.0 0.0 0.0 31.000875141606503 0.0 19 0.0 0.0 0.0 32.046289698716585 0.0 20 1.533990546016265E-4 0.0 0.0 33.23950424493534 0.0 21 1.533990546016265E-4 0.0 0.0 34.45327426447071 0.0 22 6.13596218406506E-4 0.0 0.0 35.65300827051003 0.0 23 6.13596218406506E-4 0.0 0.0 36.5931910761634 0.0 24 8.436948003089457E-4 0.0 0.0 37.37920783194213 0.0 25 8.436948003089457E-4 0.0 0.0 38.117133984103255 0.0 26 8.436948003089457E-4 0.0 0.0 38.88412925711139 0.0 27 9.203943276097589E-4 0.0 0.0 39.620598118253795 0.0 28 9.203943276097589E-4 0.0 0.0 40.408839160324256 0.0 29 9.203943276097589E-4 0.0 0.0 41.27776810511517 0.0 30 9.203943276097589E-4 0.0 0.0 42.06539555096722 0.0 31 9.203943276097589E-4 0.0 0.0 42.74526016096163 0.0 32 9.203943276097589E-4 0.0 0.0 43.423360681828115 0.0 33 9.970938549105721E-4 0.0 0.0 44.09356115138262 0.0 34 9.970938549105721E-4 0.0 0.0 44.872905048286185 0.0 35 9.970938549105721E-4 0.0 0.0 45.53927054147565 0.0 36 9.970938549105721E-4 0.0 0.0 46.20970110961206 0.0 37 9.970938549105721E-4 0.0 0.0 46.86878014770795 0.0 38 9.970938549105721E-4 0.0 0.0 47.52064943023756 0.0 39 9.970938549105721E-4 0.0 0.0 48.18087896124296 0.0 40 9.970938549105721E-4 0.0 0.0 48.799844146560524 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCAT 20 6.3117675E-4 46.000004 19 ACGGATA 20 6.3117675E-4 46.000004 4 GTCGTAG 20 6.3117675E-4 46.000004 12 TGTACGA 20 6.3117675E-4 46.000004 12 CCACGTC 20 6.3117675E-4 46.000004 37 CCTGCGT 20 6.3117675E-4 46.000004 22 CGGAGAT 20 6.3117675E-4 46.000004 5 TCGCGAG 20 6.3117675E-4 46.000004 1 GCGATCG 50 1.6370905E-11 46.0 8 CGATCGG 25 3.4174096E-5 46.0 9 TATCCGG 55 1.8189894E-12 46.0 1 CGTTTTT 13930 0.0 45.47164 1 CAACGCA 115 0.0 44.0 16 GCCACGG 105 0.0 43.809525 1 CCCGCAC 105 0.0 43.809525 32 CTAGCGG 300 0.0 43.699997 1 GTCACGG 90 0.0 43.444447 1 TCACGAC 165 0.0 43.21212 24 GGCGATA 320 0.0 43.125004 7 CGGTCTA 155 0.0 43.03226 30 >>END_MODULE