SRR1043205_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043205_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1278993
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52447	4.10064793161495	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	6742	0.5271334557734092	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	6616	0.5172819554133604	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	5146	0.4023477845461234	No Hit
CGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	2838	0.22189331763348197	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	2701	0.21118176565469868	No Hit
ACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	2139	0.1672409465884489	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCC	2068	0.16168970432207214	No Hit
GCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	1831	0.14315950126388496	No Hit
AGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	1715	0.13408986601177647	No Hit
ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	1544	0.12071997266599582	No Hit
TCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	1374	0.10742826583100924	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	1320	0.10320619424813114	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	55	1.8189894E-12	45.000004	1
CTAGCGG	270	0.0	45.000004	1
TGATCGG	20	7.033585E-4	45.0	1
TCGCATC	20	7.033585E-4	45.0	43
CGTGCCG	20	7.033585E-4	45.0	40
CGGTTGC	20	7.033585E-4	45.0	41
TAACCGG	20	7.033585E-4	45.0	1
GTCGTTG	35	1.2120654E-7	45.0	23
ACGTCAG	20	7.033585E-4	45.0	10
CGTCGAG	20	7.033585E-4	45.0	21
AGTACGG	80	0.0	45.0	1
CGGACTA	20	7.033585E-4	45.0	28
ACGGATG	25	3.8910544E-5	44.999996	4
ACGTCCG	25	3.8910544E-5	44.999996	39
ACCGTTT	25	3.8910544E-5	44.999996	43
TGGGACG	25	3.8910544E-5	44.999996	5
CGTTTTT	13425	0.0	44.513966	1
ATAGCGG	145	0.0	43.448273	1
TACGCGG	140	0.0	43.392857	1
GACGGTC	140	0.0	43.392857	28