FastQCFastQC Report
Thu 26 May 2016
SRR1043204_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043204_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2408193
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1198744.9777571814219215No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC176390.7324579051595947No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA111400.46258750855932224No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT99110.4115533929381906Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCTT83680.34748045526251425Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC73670.305914019349778No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT71750.297941236437445No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC61820.25670699981272266No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT48790.2026000407774626Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT43910.18233588420861616No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC42370.17594104791434906No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC35400.14699818494614011No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG32800.13620170808568913No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG32720.13586950879767526No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC27570.11448417963178201No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT27110.11257403372570221No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC26610.1104977881756155No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT321550.045.5636751
TCGGCGT15700.043.216564
TACGGGT2400.043.1253
GCGTCCC16250.042.8861547
ACTACGG1950.042.4615361
CGACGGT4500.042.42222627
GTCGGCG16400.042.073173
AGGGCGC11400.041.9649125
CACGACG4550.041.95604325
CTAGCGG4400.041.818181
GCACTTA44150.041.78029635
ACCCGCA44850.041.58974531
CGCACTT44300.041.58690634
CGGCGTC16550.041.552875
CCCGCAC45050.041.4561632
CCGCACT44500.041.34831633
TCGACGT950.041.15789425
GTTTTTT359000.041.124512
CGTTTCT7000.040.742861
TCACGAC4800.040.72916824