SRR1043204_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043204_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2408193
Sequences flagged as poor quality	0
Sequence length	52
%GC	45

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	119874	4.9777571814219215	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	17639	0.7324579051595947	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA	11140	0.46258750855932224	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	9911	0.4115533929381906	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCTT	8368	0.34748045526251425	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	7367	0.305914019349778	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	7175	0.297941236437445	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	6182	0.25670699981272266	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	4879	0.2026000407774626	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT	4391	0.18233588420861616	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4237	0.17594104791434906	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3540	0.14699818494614011	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	3280	0.13620170808568913	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG	3272	0.13586950879767526	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2757	0.11448417963178201	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT	2711	0.11257403372570221	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2661	0.1104977881756155	No Hit

Adapter Content

Adapter graph

Kmer Content

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	32155	45.563675	1
TCGGCGT	1570	43.21656	4
TACGGGT	240	43.125	3
GCGTCCC	1625	42.886154	7
ACTACGG	195	42.461536	1
CGACGGT	450	42.422226	27
GTCGGCG	1640	42.07317	3
AGGGCGC	1140	41.964912	5
CACGACG	455	41.956043	25
CTAGCGG	440	41.81818	1
GCACTTA	4415	41.780296	35
ACCCGCA	4485	41.589745	31
CGCACTT	4430	41.586906	34
CGGCGTC	1655	41.55287	5
CCCGCAC	4505	41.45616	32
CCGCACT	4450	41.348316	33
TCGACGT	95	41.157894	25
GTTTTTT	35900	41.12451	2
CGTTTCT	700	40.74286	1
TCACGAC	480	40.729168	24

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content