##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043204_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2408193 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.362759131016496 33.0 31.0 34.0 31.0 34.0 2 32.69237100182585 34.0 31.0 34.0 31.0 34.0 3 32.795442890167024 34.0 31.0 34.0 31.0 34.0 4 36.226841868571164 37.0 37.0 37.0 35.0 37.0 5 36.173211200265094 37.0 37.0 37.0 35.0 37.0 6 36.33415178932918 37.0 37.0 37.0 35.0 37.0 7 36.27861886485012 37.0 37.0 37.0 35.0 37.0 8 36.26949085891372 37.0 37.0 37.0 35.0 37.0 9 37.8072309819022 39.0 38.0 39.0 35.0 39.0 10 37.703025048241564 39.0 37.0 39.0 35.0 39.0 11 37.45009432383534 39.0 37.0 39.0 35.0 39.0 12 37.452325042054355 39.0 37.0 39.0 35.0 39.0 13 37.43851800914628 39.0 37.0 39.0 35.0 39.0 14 38.83786100200441 41.0 38.0 41.0 35.0 41.0 15 38.88345950677541 41.0 38.0 41.0 35.0 41.0 16 38.78960614867662 41.0 38.0 41.0 35.0 41.0 17 38.7649698342284 41.0 38.0 41.0 34.0 41.0 18 38.52463403057811 40.0 38.0 41.0 34.0 41.0 19 38.249121644320034 40.0 37.0 41.0 34.0 41.0 20 37.95548321916059 40.0 35.0 41.0 34.0 41.0 21 37.87188651407923 40.0 35.0 41.0 34.0 41.0 22 37.820572520557945 40.0 35.0 41.0 34.0 41.0 23 37.80806521736422 40.0 35.0 41.0 34.0 41.0 24 37.71309691540504 40.0 35.0 41.0 34.0 41.0 25 37.621031619973984 39.0 35.0 41.0 34.0 41.0 26 37.53235932502088 39.0 35.0 41.0 34.0 41.0 27 37.54100688773699 39.0 35.0 41.0 34.0 41.0 28 37.51045493446746 39.0 35.0 41.0 34.0 41.0 29 37.45865177749458 39.0 35.0 41.0 33.0 41.0 30 37.324348173090776 39.0 35.0 41.0 33.0 41.0 31 37.21617287318749 39.0 35.0 41.0 33.0 41.0 32 36.929497345104814 39.0 35.0 41.0 33.0 41.0 33 36.50163919586179 39.0 35.0 41.0 31.0 41.0 34 36.20080367312753 39.0 35.0 41.0 30.0 41.0 35 36.00256748524724 39.0 35.0 41.0 29.0 41.0 36 35.93727246944078 39.0 35.0 41.0 29.0 41.0 37 35.8763579164959 39.0 35.0 41.0 29.0 41.0 38 35.78735093076012 39.0 35.0 41.0 27.0 41.0 39 35.78862948276986 39.0 35.0 41.0 28.0 41.0 40 35.70584874218968 39.0 35.0 41.0 27.0 41.0 41 35.669242041646996 39.0 35.0 41.0 27.0 41.0 42 35.583977696139804 39.0 35.0 41.0 27.0 41.0 43 35.47597763136094 39.0 35.0 41.0 26.0 41.0 44 35.305663624136436 38.0 35.0 41.0 25.0 41.0 45 35.1938299795739 38.0 35.0 41.0 24.0 41.0 46 35.158335316147834 38.0 35.0 41.0 24.0 41.0 47 35.05239862419665 38.0 35.0 40.0 24.0 41.0 48 34.947703527084414 37.0 35.0 40.0 23.0 41.0 49 34.88707258928167 37.0 35.0 40.0 24.0 41.0 50 34.762943003322405 37.0 35.0 40.0 24.0 41.0 51 34.621783220863115 37.0 35.0 40.0 24.0 41.0 52 34.16897690509025 36.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 3.0 13 9.0 14 19.0 15 42.0 16 97.0 17 197.0 18 510.0 19 1040.0 20 1706.0 21 2922.0 22 4652.0 23 8074.0 24 14752.0 25 27465.0 26 40920.0 27 46316.0 28 44741.0 29 41417.0 30 41624.0 31 46328.0 32 53698.0 33 68227.0 34 141872.0 35 201139.0 36 210689.0 37 195347.0 38 333414.0 39 878996.0 40 1976.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.49148427887632 17.270376585265385 23.89443038826207 31.343708747596228 2 36.78405343757747 19.090870208492426 24.179208227911968 19.94586812601814 3 24.269234234963726 20.156731624084948 36.77209426320897 18.801939877742356 4 21.651794519791395 23.05932290310619 35.05537139257526 20.233511184527153 5 19.982160898233655 30.60925764670855 31.46824195569043 17.94033949936737 6 75.65519042701312 1.818957201519978 19.595896176095522 2.929956195371384 7 75.87905122222347 1.5675238654044754 17.70090686253137 4.85251804984069 8 67.18498060579032 2.906992919587425 23.133154194867274 6.774872279754987 9 33.38727419272459 16.84391574927757 28.29212608790076 21.47668397009708 10 27.000244581725802 19.7342571795533 36.93943965454596 16.32605858417494 11 25.500198696699144 15.598832817801563 38.36175090617737 20.53921757932192 12 21.494747306382838 16.158173368994927 41.16974843793666 21.177330886685578 13 17.58322526475245 19.742977410863663 40.471839258730505 22.201958065653375 14 16.624290494989395 20.49910451529425 41.607047275695926 21.26955771402043 15 19.00092725126267 16.71485632588418 43.12399379950029 21.160222623352862 16 18.28732165569786 21.115209619826985 39.13349137714461 21.46397734733055 17 18.135506581075518 21.663089295583866 39.777252072404494 20.42415205093612 18 19.832712743538412 26.843944816715272 36.19979793978307 17.123544499963252 19 19.570773604939472 22.368348384037326 35.71727847394291 22.34359953708029 20 19.44275230432112 26.434260044772156 35.96862876023641 18.15435889067031 21 16.951797468060075 21.63393880806065 36.86070842328667 24.553555300592603 22 17.33420037347505 24.028805000263684 35.458412178758095 23.178582447503167 23 18.237823961783796 21.84123116378131 39.495464026346724 20.425480848088174 24 22.000977496404982 20.514676356919896 35.76843716429705 21.715908982378075 25 17.470194457005732 21.52838248429424 37.826910052475036 23.174513006225002 26 17.374230387680722 19.688413677807386 38.4151104168146 24.522245517697293 27 21.223714212274515 20.361407910412495 38.352740000489995 20.062137876822998 28 20.319716899766753 22.047609971459927 34.6828098910677 22.949863237705614 29 23.345055815709124 19.33781885421974 36.36054087027078 20.956584459800357 30 23.263999189433736 19.275905211916154 36.303776316931405 21.156319281718698 31 24.372838887913055 19.088877012764343 33.60478167655167 22.933502422770932 32 25.226549533197712 18.286283532922816 34.17014333984029 22.31702359403918 33 20.756226764216986 19.236331971731502 37.741368735811456 22.266072528240056 34 21.084937959706718 19.039877617782295 37.42004897448004 22.45513544803095 35 23.884796608909667 21.040713929489872 34.758053029802845 20.31643643179762 36 21.915851428851425 22.689875769923756 34.78176375398483 20.612509047239985 37 22.875367547368505 22.56521798709655 36.35219436315943 18.207220102375516 38 20.654947506283758 22.485656257617226 33.40018844004612 23.45920779605289 39 24.20923073856622 20.770262184135575 35.774541326214305 19.245965751083904 40 19.21278734719352 20.77184013075364 38.12103099710031 21.894341524952527 41 20.642739182449247 24.17904212826796 32.55910136770599 22.6191173215768 42 19.833958490868465 19.278687380953272 35.07509572530109 25.81225840287718 43 22.83164181608368 20.566997744782086 34.705440967563646 21.895919471570593 44 21.53050025475533 20.62841308815365 35.665704534478756 22.175382122612266 45 22.547902099208823 20.323495666667913 34.57114940538404 22.557452828739226 46 23.168491894129748 20.310166170236354 33.619190820669274 22.90215111496462 47 20.006785170457682 21.187629064614008 35.652042838759186 23.153542926169123 48 20.689703856792207 19.460732590784875 33.20821877648511 26.64134477593781 49 20.705483322972867 16.917373316839637 37.62401933732056 24.75312402286694 50 19.74530280587976 17.546434193604917 38.65624557500167 24.052017425513654 51 18.448438310384592 16.53480431178066 37.9531873068313 27.063570071003447 52 16.664029834818056 17.91600590152035 40.503190566536816 24.916773697124775 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 512.0 1 2774.0 2 5036.0 3 80209.5 4 155383.0 5 89011.5 6 22640.0 7 21157.0 8 19674.0 9 19480.0 10 19286.0 11 19079.0 12 18872.0 13 18126.0 14 16409.5 15 15439.0 16 14542.0 17 13645.0 18 12845.0 19 12045.0 20 11356.5 21 10668.0 22 10244.5 23 9821.0 24 9566.5 25 9312.0 26 10237.0 27 11162.0 28 12064.5 29 12967.0 30 14031.0 31 15095.0 32 17521.5 33 19948.0 34 23304.0 35 26660.0 36 30990.0 37 35320.0 38 38940.5 39 45649.0 40 48737.0 41 58435.5 42 68134.0 43 82854.5 44 97575.0 45 127567.0 46 157559.0 47 198871.5 48 240184.0 49 261039.0 50 281894.0 51 265472.5 52 249051.0 53 211174.0 54 173297.0 55 152539.5 56 131782.0 57 118330.5 58 104879.0 59 95204.0 60 85529.0 61 80377.5 62 75226.0 63 73443.5 64 57372.0 65 43083.0 66 34889.5 67 26696.0 68 20839.5 69 14983.0 70 13567.0 71 12151.0 72 14498.5 73 16846.0 74 12509.0 75 8172.0 76 5943.5 77 3715.0 78 2855.0 79 1995.0 80 1477.0 81 959.0 82 670.0 83 381.0 84 274.0 85 167.0 86 119.5 87 72.0 88 43.5 89 14.5 90 14.0 91 9.0 92 4.0 93 3.0 94 2.0 95 2.0 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2408193.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.300737708471033 #Duplication Level Percentage of deduplicated Percentage of total 1 75.6758094507818 23.687086624951544 2 10.343184053885352 6.47498582282211 3 3.676082980707461 3.4519232752109588 4 1.8698729177979423 2.3411360699266726 5 1.088992075632055 1.7043127662981206 6 0.7950614021119835 1.4931605045781848 7 0.5606628544717187 1.2284412665491355 8 0.4856772253344173 1.2161644352936465 9 0.40974811091049596 1.154287633153584 >10 4.620934645220227 31.012222505190696 >50 0.3225012006319469 6.630787589632173 >100 0.1405208922487669 7.847512300559657 >500 0.005876785020664317 1.2735452234401068 >1k 0.004006898877725671 2.639231525318384 >5k 6.678164796209452E-4 1.630570999239552 >10k+ 4.006898877725671E-4 6.214631457835478 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 119874 4.9777571814219215 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 17639 0.7324579051595947 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 11140 0.46258750855932224 No Hit CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT 9911 0.4115533929381906 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCTT 8368 0.34748045526251425 Illumina Single End Adapter 1 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 7367 0.305914019349778 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT 7175 0.297941236437445 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC 6182 0.25670699981272266 No Hit GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT 4879 0.2026000407774626 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT 4391 0.18233588420861616 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4237 0.17594104791434906 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3540 0.14699818494614011 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG 3280 0.13620170808568913 No Hit CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG 3272 0.13586950879767526 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2757 0.11448417963178201 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT 2711 0.11257403372570221 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2661 0.1104977881756155 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.35989640365203285 0.0 2 0.0 0.0 0.0 1.1394020329765928 0.0 3 0.0 0.0 0.0 1.9724332725823885 0.0 4 0.0 0.0 0.0 2.498014071131342 0.0 5 0.0 0.0 0.0 5.211750054916695 0.0 6 0.0 0.0 0.0 6.2485440328080015 0.0 7 0.0 0.0 0.0 8.955885180299088 0.0 8 0.0 0.0 0.0 11.674230429205632 0.0 9 4.1524911001734496E-5 0.0 0.0 14.549290692232724 0.0 10 4.1524911001734496E-5 0.0 0.0 16.122794144821448 0.0 11 4.1524911001734496E-5 0.0 0.0 17.327888587002786 0.0 12 4.1524911001734496E-5 0.0 0.0 18.21689540663892 0.0 13 8.304982200346899E-5 0.0 0.0 18.66000773193843 0.0 14 8.304982200346899E-5 0.0 0.0 18.969991192566376 0.0 15 8.304982200346899E-5 0.0 0.0 19.787948889478542 0.0 16 8.304982200346899E-5 0.0 0.0 20.66537025894519 0.0 17 8.304982200346899E-5 0.0 0.0 21.730982525071703 0.0 18 8.304982200346899E-5 0.0 0.0 22.297548410779367 0.0 19 8.304982200346899E-5 0.0 0.0 22.963026634493165 0.0 20 8.304982200346899E-5 0.0 0.0 23.72828921934413 0.0 21 8.304982200346899E-5 0.0 0.0 24.462491170765798 0.0 22 8.304982200346899E-5 0.0 0.0 25.251298380154747 0.0 23 8.304982200346899E-5 0.0 0.0 25.892110806733513 0.0 24 8.304982200346899E-5 0.0 0.0 26.461708010944307 0.0 25 8.304982200346899E-5 0.0 0.0 26.984506640456143 0.0 26 8.304982200346899E-5 0.0 0.0 27.540732823324376 0.0 27 8.304982200346899E-5 0.0 0.0 28.104059765973908 0.0 28 8.304982200346899E-5 0.0 0.0 28.665891811827375 0.0 29 8.304982200346899E-5 0.0 0.0 29.237648311410258 0.0 30 8.304982200346899E-5 0.0 0.0 29.748446241642593 0.0 31 8.304982200346899E-5 0.0 0.0 30.25405355799971 0.0 32 1.2457473300520348E-4 0.0 0.0 30.79910953980848 0.0 33 1.2457473300520348E-4 0.0 0.0 31.336192738704913 0.0 34 1.6609964400693798E-4 0.0 0.0 31.909444135083856 0.0 35 1.6609964400693798E-4 0.0 0.0 32.40109908134439 0.0 36 1.6609964400693798E-4 0.0 0.0 32.91443003114784 0.0 37 1.6609964400693798E-4 0.0 0.0 33.47775697379737 0.0 38 2.076245550086725E-4 0.0 0.0 34.07995123314452 0.0 39 2.076245550086725E-4 0.0 0.0 34.70710196400371 0.0 40 2.076245550086725E-4 0.0 0.0 35.31220296712099 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 32155 0.0 45.563675 1 TCGGCGT 1570 0.0 43.21656 4 TACGGGT 240 0.0 43.125 3 GCGTCCC 1625 0.0 42.886154 7 ACTACGG 195 0.0 42.461536 1 CGACGGT 450 0.0 42.422226 27 GTCGGCG 1640 0.0 42.07317 3 AGGGCGC 1140 0.0 41.964912 5 CACGACG 455 0.0 41.956043 25 CTAGCGG 440 0.0 41.81818 1 GCACTTA 4415 0.0 41.780296 35 ACCCGCA 4485 0.0 41.589745 31 CGCACTT 4430 0.0 41.586906 34 CGGCGTC 1655 0.0 41.55287 5 CCCGCAC 4505 0.0 41.45616 32 CCGCACT 4450 0.0 41.348316 33 TCGACGT 95 0.0 41.157894 25 GTTTTTT 35900 0.0 41.12451 2 CGTTTCT 700 0.0 40.74286 1 TCACGAC 480 0.0 40.729168 24 >>END_MODULE