##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043203_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2345915 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.32506164971877 33.0 31.0 34.0 31.0 34.0 2 32.62331073376486 34.0 31.0 34.0 31.0 34.0 3 32.71043537383068 34.0 31.0 34.0 31.0 34.0 4 36.19548918012801 37.0 37.0 37.0 35.0 37.0 5 36.187060059720835 37.0 37.0 37.0 35.0 37.0 6 36.35225615591358 37.0 37.0 37.0 35.0 37.0 7 36.30765479567674 37.0 37.0 37.0 35.0 37.0 8 36.22436916938593 37.0 37.0 37.0 35.0 37.0 9 37.76810881894698 39.0 38.0 39.0 35.0 39.0 10 37.64920851778517 39.0 37.0 39.0 35.0 39.0 11 37.43409160178438 39.0 37.0 39.0 35.0 39.0 12 37.443437208935535 39.0 37.0 39.0 35.0 39.0 13 37.44324197594542 39.0 37.0 39.0 35.0 39.0 14 38.83765311189877 41.0 38.0 41.0 35.0 41.0 15 38.893315401453165 41.0 38.0 41.0 35.0 41.0 16 38.837993277676304 41.0 38.0 41.0 35.0 41.0 17 38.78566955750741 41.0 38.0 41.0 34.0 41.0 18 38.570003175733135 40.0 38.0 41.0 34.0 41.0 19 38.318419465325896 40.0 37.0 41.0 35.0 41.0 20 38.045853323756404 40.0 35.0 41.0 34.0 41.0 21 37.96213162028462 40.0 35.0 41.0 34.0 41.0 22 37.927881018706984 40.0 35.0 41.0 34.0 41.0 23 37.880806423080124 40.0 35.0 41.0 34.0 41.0 24 37.795563777886244 40.0 35.0 41.0 34.0 41.0 25 37.76472719599815 40.0 35.0 41.0 34.0 41.0 26 37.72047793718016 40.0 35.0 41.0 34.0 41.0 27 37.68906759196305 39.0 35.0 41.0 34.0 41.0 28 37.606680548954245 39.0 35.0 41.0 34.0 41.0 29 37.5912311400882 39.0 35.0 41.0 34.0 41.0 30 37.41964222915153 39.0 35.0 41.0 34.0 41.0 31 37.29439770835687 39.0 35.0 41.0 33.0 41.0 32 37.021256098366734 39.0 35.0 41.0 33.0 41.0 33 36.582726143104075 39.0 35.0 41.0 31.0 41.0 34 36.24507026043143 39.0 35.0 41.0 30.0 41.0 35 36.05259184582562 39.0 35.0 41.0 30.0 41.0 36 35.9617108889282 39.0 35.0 41.0 29.0 41.0 37 35.862578141151744 39.0 35.0 41.0 29.0 41.0 38 35.76427193653649 39.0 35.0 41.0 27.0 41.0 39 35.71322831389884 39.0 35.0 41.0 27.0 41.0 40 35.60443195938472 39.0 35.0 41.0 27.0 41.0 41 35.52701056943666 39.0 35.0 41.0 26.0 41.0 42 35.42555207669502 38.0 35.0 41.0 26.0 41.0 43 35.30278931674847 38.0 35.0 41.0 25.0 41.0 44 35.17367551680261 38.0 35.0 40.0 24.0 41.0 45 35.09238740534077 38.0 35.0 40.0 24.0 41.0 46 35.00697510353103 38.0 35.0 40.0 23.0 41.0 47 34.84764239113523 38.0 35.0 40.0 23.0 41.0 48 34.7720616475874 37.0 35.0 40.0 23.0 41.0 49 34.69376725073159 37.0 35.0 40.0 24.0 41.0 50 34.60353593374014 37.0 35.0 40.0 24.0 41.0 51 34.13146171110206 36.0 34.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 7.0 14 19.0 15 41.0 16 90.0 17 189.0 18 418.0 19 830.0 20 1606.0 21 2541.0 22 4082.0 23 6692.0 24 11787.0 25 23052.0 26 37815.0 27 46000.0 28 45147.0 29 42025.0 30 41803.0 31 45811.0 32 51813.0 33 65555.0 34 137512.0 35 199382.0 36 198254.0 37 191117.0 38 344903.0 39 847219.0 40 201.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.75569447315866 17.377952739123113 23.90448929309033 30.961863494627895 2 36.478261147569285 19.219451685163357 24.20846450105822 20.09382266620913 3 24.426716227996327 20.256403151861853 36.36308220886094 18.953798411280886 4 21.80590515854155 23.23374887836942 34.58518318012375 20.37516278296528 5 20.1189301402651 30.73922115677678 31.12525389879855 18.01659480415957 6 76.0597464102493 1.798146991685547 19.1984790582779 2.943627539787247 7 76.28724825920803 1.554617281529808 17.320960051834785 4.837174407427379 8 67.59818663506564 2.881775341391312 22.7783189075478 6.741719115995251 9 33.59375765959125 16.8946871476588 27.892314938947067 21.61924025380289 10 27.330316742081447 19.75276171557793 36.53444391633968 16.38247762600094 11 25.829367219187393 15.632066805489542 37.99587794101662 20.542688034306444 12 21.74166583188223 16.17398754856847 40.9161030983646 21.1682435211847 13 17.70106760048851 19.78750295726827 40.213051197507156 22.29837824473606 14 16.77209106041779 20.514340886178744 41.38611160250904 21.327456450894427 15 19.20214500525381 16.67217269167894 42.87486972034366 21.250812582723587 16 18.4611548159247 21.030003218360427 38.93065179258413 21.57819017313074 17 18.365413921646777 21.597756099432416 39.49158430718931 20.5452456717315 18 20.044758654938477 26.966322309205577 35.87048124079517 17.118437795060775 19 19.766487703092398 22.37809127781697 35.40268935575245 22.452731663338184 20 19.579609661901646 26.574833274010356 35.58138295718302 18.26417410690498 21 17.07964696078076 21.64988927561314 36.604608436367045 24.665855327239054 22 17.473224733206447 24.10262093895133 35.14402695749846 23.280127370343767 23 18.42249186351594 21.808803814289945 39.177719567844534 20.59098475434958 24 22.218494702493484 20.460886263995075 35.498941777515384 21.82167725599606 25 17.396197219421847 21.551462862038907 37.75469273183385 23.2976471867054 26 17.475739743341084 19.60160534375713 38.22623581843332 24.696419094468467 27 21.217307532455354 20.390380725644363 38.15185119665461 20.24046054524567 28 20.42290534823299 22.096239633575813 34.463780657014425 23.01707436117677 29 23.491899749138394 19.41229754701257 36.06874076852742 21.027061935321612 30 23.446970585038247 19.207857062169772 36.016096064861685 21.329076287930295 31 24.53878337450419 19.079250526979877 33.34140410031907 23.040561998196864 32 25.373340466299933 18.20215139934738 33.91947278567212 22.50503534868058 33 20.969216702224934 19.10742716594591 37.54769460956599 22.37566152226317 34 21.214920404191968 18.98691981593536 37.250752904517 22.547406875355673 35 24.034502528864003 20.948712975534068 34.56826014582796 20.44852434977397 36 22.03344963479069 22.65529654740261 34.57525102145645 20.73600279635025 37 23.015880797045078 22.432483700389827 36.282175611648334 18.269459890916764 38 20.790608355375195 22.34292376322245 33.315529335035585 23.55093854636677 39 24.411114639703484 20.664218439287016 35.60730034975691 19.31736657125258 40 19.386039136115333 20.73455346847605 37.92034238239663 21.95906501301198 41 20.72023069889574 24.149169940087344 32.386339658512775 22.74425970250414 42 19.92335613182916 19.204745269969287 34.9435508106645 25.92834778753706 43 23.038089615352643 20.36847029836972 34.603853933326654 21.98958615295098 44 21.704452207347664 20.39114801687188 35.6079823864036 22.296417389376852 45 22.708197014810853 20.145060669291087 34.640172384762444 22.506569931135612 46 23.354853010445815 20.114326392899997 33.57150621399326 22.95931438266092 47 20.3156124582519 21.012312892837123 35.53116800907109 23.14090663983989 48 20.82974020797855 19.344392273377338 33.119529053695466 26.706338464948644 49 20.81729303917661 16.79071918633028 37.53115522088396 24.860832553609146 50 19.94249578522666 17.39930901162233 38.61086185987131 24.0473333432797 51 18.642619191232416 16.559252999362723 37.6288569705211 27.16927083888376 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 454.0 1 2615.0 2 4776.0 3 75785.0 4 146794.0 5 85109.5 6 23425.0 7 21390.0 8 19355.0 9 19061.5 10 18768.0 11 18395.5 12 18023.0 13 17371.0 14 16719.0 15 15621.0 16 14523.0 17 13517.5 18 12512.0 19 11841.0 20 11170.0 21 10603.5 22 10037.0 23 9314.0 24 8591.0 25 8861.0 26 9768.0 27 10405.0 28 11446.0 29 12487.0 30 14211.0 31 15935.0 32 18478.0 33 21021.0 34 24769.5 35 28518.0 36 32636.5 37 36755.0 38 40214.5 39 43674.0 40 49786.0 41 55898.0 42 66581.5 43 77265.0 44 92333.0 45 107401.0 46 144626.0 47 181851.0 48 228281.5 49 274712.0 50 283978.0 51 293244.0 52 249839.5 53 206435.0 54 176493.0 55 146551.0 56 131471.5 57 116392.0 58 106183.0 59 95974.0 60 87348.0 61 78722.0 62 73225.0 63 67728.0 64 63979.0 65 60230.0 66 46864.0 67 33498.0 68 26044.0 69 18590.0 70 16113.0 71 13636.0 72 14360.5 73 15085.0 74 12781.5 75 7576.5 76 4675.0 77 3570.0 78 2465.0 79 1810.5 80 1156.0 81 804.5 82 453.0 83 360.0 84 267.0 85 169.5 86 72.0 87 53.5 88 35.0 89 27.0 90 19.0 91 11.5 92 4.0 93 4.5 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2345915.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.101034434912506 #Duplication Level Percentage of deduplicated Percentage of total 1 75.19887176738852 23.387627003041203 2 10.441815777737366 6.49502544132845 3 3.8627887700423753 3.6041017965564373 4 1.903464285731043 2.3679883318458925 5 1.1035710260246923 1.7161100240882836 6 0.7699363811049443 1.4367490740862077 7 0.6049990166667389 1.3171266675308315 8 0.48160454739584224 1.1982719690054833 9 0.40904506034905613 1.1449552056612171 >10 4.755746520917356 31.53491987850701 >50 0.31476655604703246 6.454531084098096 >100 0.14246412007117348 7.912930587782261 >500 0.005947156107869711 1.308675673196642 >1k 0.0038725667679151603 2.5384626011710045 >5k 8.298357359818201E-4 2.012179178164138 >10k+ 2.7661191199394E-4 5.570345483936759 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 112463 4.793992962234352 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 17036 0.7261985195542038 No Hit CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 9444 0.4025721307037979 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 9227 0.393322008683179 No Hit CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT 8146 0.34724190774175534 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG 7317 0.3119038839855664 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC 6674 0.28449453624705073 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT 5971 0.2545275510834792 No Hit GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 4684 0.19966622831603023 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT 4153 0.17703113710428553 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4077 0.17379146303254808 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3499 0.14915288917117628 No Hit CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT 3113 0.13269875506998335 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCC 2959 0.1261341523456732 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2638 0.11245079212162418 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2624 0.11185401005577782 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTC 2532 0.10793229933735878 No Hit GGGCCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC 2372 0.10111193287054304 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 2358 0.10051515080469668 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3599874675766172 0.0 2 0.0 0.0 0.0 1.1345253344643775 0.0 3 0.0 0.0 0.0 1.973430409882711 0.0 4 0.0 0.0 0.0 2.5024350839651053 0.0 5 0.0 0.0 0.0 5.236634745930692 0.0 6 0.0 0.0 0.0 6.284413544395258 0.0 7 0.0 0.0 0.0 9.001732799355475 0.0 8 0.0 0.0 0.0 11.730604050018863 0.0 9 0.0 0.0 0.0 14.679261610075386 0.0 10 0.0 0.0 0.0 16.28456273991172 0.0 11 4.262729041759825E-5 0.0 0.0 17.488911576080124 0.0 12 8.52545808351965E-5 0.0 0.0 18.382635346975487 0.0 13 8.52545808351965E-5 0.0 0.0 18.83802269050669 0.0 14 8.52545808351965E-5 0.0 0.0 19.151503784237708 0.0 15 8.52545808351965E-5 0.0 0.0 19.9939469247607 0.0 16 8.52545808351965E-5 0.0 0.0 20.901140919428027 0.0 17 8.52545808351965E-5 0.0 0.0 22.00356790420795 0.0 18 1.2788187125279475E-4 0.0 0.0 22.597920214500526 0.0 19 1.2788187125279475E-4 0.0 0.0 23.266529264700555 0.0 20 1.2788187125279475E-4 0.0 0.0 24.059652630210387 0.0 21 1.2788187125279475E-4 0.0 0.0 24.821402309972868 0.0 22 1.2788187125279475E-4 0.0 0.0 25.61806374058736 0.0 23 1.70509161670393E-4 0.0 0.0 26.272861548692088 0.0 24 2.1313645208799126E-4 0.0 0.0 26.852209052757665 0.0 25 2.1313645208799126E-4 0.0 0.0 27.389611303052327 0.0 26 2.1313645208799126E-4 0.0 0.0 27.946963125262425 0.0 27 2.1313645208799126E-4 0.0 0.0 28.537606861288666 0.0 28 2.1313645208799126E-4 0.0 0.0 29.125437196147345 0.0 29 2.557637425055895E-4 0.0 0.0 29.69792170645569 0.0 30 2.9839103292318773E-4 0.0 0.0 30.227608417184765 0.0 31 2.9839103292318773E-4 0.0 0.0 30.732102399277043 0.0 32 2.9839103292318773E-4 0.0 0.0 31.298746970798174 0.0 33 2.9839103292318773E-4 0.0 0.0 31.839729913487915 0.0 34 2.9839103292318773E-4 0.0 0.0 32.42180556414022 0.0 35 2.9839103292318773E-4 0.0 0.0 32.91351135910721 0.0 36 2.9839103292318773E-4 0.0 0.0 33.43283963826482 0.0 37 2.9839103292318773E-4 0.0 0.0 34.010311541552014 0.0 38 2.9839103292318773E-4 0.0 0.0 34.62107535865537 0.0 39 2.9839103292318773E-4 0.0 0.0 35.260783105952264 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATAT 20 7.034791E-4 45.0 12 ACAATCG 20 7.034791E-4 45.0 31 CGTTTTT 31635 0.0 44.43101 1 ACTACGG 120 0.0 43.124996 1 CTAGCGG 485 0.0 42.68041 1 ATTACGG 165 0.0 42.272728 1 CACGACG 410 0.0 41.707317 25 TCGGCGT 1445 0.0 41.574398 4 CGCACTT 4350 0.0 41.172413 34 GCGTCCC 1460 0.0 41.147263 7 TACGGGT 225 0.0 41.0 3 TAGGGCG 665 0.0 40.93985 4 GTCGGCG 1475 0.0 40.728813 3 CCGCACT 4435 0.0 40.434048 33 ACCCGCA 4460 0.0 40.358746 31 CGTTTTC 530 0.0 40.33019 1 GCACTTA 4435 0.0 40.28185 35 CCCGCAC 4525 0.0 40.276245 32 GTTTTTT 35210 0.0 40.232887 2 TAGGGCA 1175 0.0 40.21277 4 >>END_MODULE