##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043201_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2465207 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.367107102973506 33.0 31.0 34.0 31.0 34.0 2 32.66581832681799 34.0 31.0 34.0 31.0 34.0 3 32.76699035821333 34.0 31.0 34.0 31.0 34.0 4 36.24398519069595 37.0 37.0 37.0 35.0 37.0 5 36.23676267347935 37.0 37.0 37.0 35.0 37.0 6 36.373814450470086 37.0 37.0 37.0 35.0 37.0 7 36.32236075915734 37.0 37.0 37.0 35.0 37.0 8 36.23079076118152 37.0 37.0 37.0 35.0 37.0 9 37.843246023559075 39.0 38.0 39.0 35.0 39.0 10 37.64931180221377 39.0 37.0 39.0 35.0 39.0 11 37.43081656023206 39.0 37.0 39.0 35.0 39.0 12 37.45883084057444 39.0 37.0 39.0 35.0 39.0 13 37.466701579218295 39.0 37.0 39.0 35.0 39.0 14 38.75152390853993 40.0 38.0 41.0 35.0 41.0 15 38.848286979551816 41.0 38.0 41.0 35.0 41.0 16 38.81541225544143 41.0 38.0 41.0 35.0 41.0 17 38.70703717781103 40.0 38.0 41.0 34.0 41.0 18 38.53307977788478 40.0 38.0 41.0 34.0 41.0 19 38.33397844481214 40.0 37.0 41.0 35.0 41.0 20 38.00341391209744 40.0 35.0 41.0 34.0 41.0 21 37.97076432121116 40.0 35.0 41.0 34.0 41.0 22 37.968379937262874 40.0 35.0 41.0 34.0 41.0 23 37.94174485144655 40.0 35.0 41.0 34.0 41.0 24 37.871051396495304 40.0 35.0 41.0 34.0 41.0 25 37.84985642179338 40.0 35.0 41.0 34.0 41.0 26 37.813588473503444 40.0 35.0 41.0 34.0 41.0 27 37.78444122542245 40.0 35.0 41.0 34.0 41.0 28 37.70008279223611 40.0 35.0 41.0 34.0 41.0 29 37.663655830930225 40.0 35.0 41.0 34.0 41.0 30 37.55577645203831 40.0 35.0 41.0 34.0 41.0 31 37.391812127744245 40.0 35.0 41.0 33.0 41.0 32 37.14220915322729 40.0 35.0 41.0 33.0 41.0 33 36.684926661331076 39.0 35.0 41.0 32.0 41.0 34 36.394428540889265 39.0 35.0 41.0 31.0 41.0 35 36.24674682491166 39.0 35.0 41.0 31.0 41.0 36 36.15750117535769 39.0 35.0 41.0 30.0 41.0 37 36.01461702810352 39.0 35.0 41.0 30.0 41.0 38 35.90972441665142 39.0 35.0 41.0 30.0 41.0 39 35.84241972377979 38.0 35.0 41.0 30.0 41.0 40 35.74497192325026 38.0 35.0 41.0 30.0 41.0 41 35.644209593758255 38.0 35.0 41.0 29.0 41.0 42 35.53627017933991 38.0 35.0 40.0 29.0 41.0 43 35.409027314947586 38.0 35.0 40.0 28.0 41.0 44 35.28074356433354 37.0 35.0 40.0 28.0 41.0 45 35.19496172126722 37.0 35.0 40.0 27.0 41.0 46 35.08896615983972 37.0 35.0 40.0 27.0 41.0 47 34.95333008546544 37.0 35.0 40.0 26.0 41.0 48 34.86988313760264 36.0 35.0 40.0 26.0 41.0 49 34.78388549115754 36.0 35.0 40.0 26.0 41.0 50 34.706374758793075 36.0 35.0 40.0 26.0 41.0 51 34.27228058333438 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 11.0 14 17.0 15 49.0 16 102.0 17 221.0 18 433.0 19 768.0 20 1533.0 21 2497.0 22 3854.0 23 6184.0 24 10517.0 25 19718.0 26 32380.0 27 41744.0 28 43512.0 29 41086.0 30 41437.0 31 44968.0 32 53069.0 33 69933.0 34 151488.0 35 224072.0 36 225677.0 37 248261.0 38 378918.0 39 822507.0 40 248.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.66667707823319 17.472569240635778 23.81065768513557 29.050095995995466 2 34.66284981342337 20.025133792010163 23.774068465650146 21.537947928916314 3 25.361561929687852 21.13721079000668 33.61170076184272 19.88952651846275 4 23.38489222203247 23.500095529503202 31.6071226473071 21.507889601157228 5 21.878203331403814 31.56643640878839 28.559346131988107 17.99601412781969 6 78.78056487751333 2.117834323851912 16.332381013034606 2.7692197856001544 7 78.3861558076056 1.879111977209216 15.299242619382468 4.435489595802705 8 69.31377365065083 3.5345104893828387 20.375286943449375 6.77642891651695 9 41.59391077503836 15.969450029956917 24.90350708885704 17.53313210614768 10 27.096020739840508 16.43971479879783 34.91978564071901 21.54447882064265 11 23.53023498635206 13.596383589694497 39.44845199612041 23.42492942783304 12 22.044436836338694 14.631550210590834 41.37149537543906 21.95251757763141 13 18.44056097520411 17.35683859408155 42.19345474842478 22.00914568228956 14 16.864993487362316 17.20078678991257 44.01557354007189 21.91864618265322 15 20.5070405852328 16.060071223227908 41.73592724667746 21.696960944861832 16 21.390942018256478 18.20248766127956 37.88180870815311 22.524761612310854 17 20.692420555352957 19.029436473286015 39.224292321091085 21.053850650269936 18 22.70316448071095 23.66284048357805 34.60390952970683 19.03008550600416 19 23.237196714109608 20.546347629225455 33.43362240980169 22.782833246863245 20 21.925177074379555 24.13566081874666 34.79310256704609 19.14605953982769 21 20.826364682560126 19.73108140614561 34.685728216737985 24.756825694556277 22 21.995191478849442 21.282431860691617 32.98274749341536 23.73962916704358 23 21.037462574136775 19.454187822767015 35.68020859911561 23.828141003980598 24 23.952268511325826 18.546393872806625 33.634011261528954 23.8673263543386 25 18.93305511464149 19.324584101862442 35.6151025045767 26.127258278919374 26 19.00213653457904 19.53649328433677 35.795330777496574 25.66603940358761 27 21.842952741899566 20.34157780665072 35.155141130136336 22.660328321313383 28 23.58442921831716 21.160819355129203 31.93387005634821 23.320881370205424 29 22.07940347402875 18.821989390748932 35.17294896534043 23.92565816988188 30 26.73118322315327 18.46254695853127 30.97342332712831 23.832846491187148 31 26.66056035051012 19.410621501561533 31.594344815668624 22.334473332259723 32 26.879446634704507 17.9965009023583 31.203059215716976 23.920993247220213 33 24.202146107811636 20.482052825584223 34.308031739322495 21.007769327281643 34 23.06370215564048 22.239998507224747 32.22642155405205 22.46987778308272 35 27.44515977765762 22.70275883526211 28.999755395794345 20.852325991285923 36 26.014448279596802 21.013286105385877 29.116297333246255 23.855968281771066 37 25.605395408985938 23.53433200538535 30.68642917207358 20.17384341355513 38 23.701823011211633 19.937230423246405 30.315060763660007 26.04588580188195 39 24.903872169760998 17.80759181683323 33.8560615802243 23.432474433181476 40 21.016044494437995 17.798505358779202 35.14662257571068 26.038827571072126 41 22.816866900020973 21.644064778333018 30.484701690365153 25.05436663128086 42 21.57745779563339 17.82734675019177 31.995933810020823 28.599261644154023 43 23.317676771159583 19.48124437420468 33.45045669592858 23.75062215870716 44 23.376049151247745 20.088779562933254 33.024163893741985 23.511007392077012 45 24.146694374955125 21.02221030526037 32.138355927108755 22.692739392675747 46 23.961273840290083 20.158591144678724 31.828523933284302 24.051611081746888 47 22.798004386649882 20.082694881200645 32.562295985692074 24.557004746457398 48 23.519769333771972 18.638597083328094 30.666268593266206 27.17536498963373 49 22.533645247640465 18.300410472629682 33.90043919232746 25.265505087402396 50 22.84282820874677 16.978939293941643 35.19027002600593 24.987962471305654 51 21.520667432795705 16.44900407957628 34.74762971223106 27.282698775396952 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 532.0 1 3586.0 2 6640.0 3 69962.5 4 133285.0 5 77674.0 6 22063.0 7 20076.0 8 18089.0 9 17636.0 10 17183.0 11 16667.0 12 16151.0 13 15151.5 14 14152.0 15 13142.5 16 12133.0 17 11569.5 18 11006.0 19 10311.5 20 9617.0 21 9156.5 22 8696.0 23 8421.5 24 8147.0 25 8548.0 26 9926.0 27 10903.0 28 11767.5 29 12632.0 30 13952.0 31 15272.0 32 17527.0 33 19782.0 34 23477.5 35 27173.0 36 30158.5 37 33144.0 38 36386.0 39 39628.0 40 44846.5 41 50065.0 42 57193.5 43 64322.0 44 72457.0 45 80592.0 46 92516.0 47 104440.0 48 135892.0 49 167344.0 50 202180.5 51 237017.0 52 246721.5 53 256426.0 54 230700.0 55 204974.0 56 181382.0 57 157790.0 58 144559.5 59 131329.0 60 126276.5 61 121224.0 62 117351.5 63 113479.0 64 111987.5 65 110496.0 66 93185.5 67 75875.0 68 61620.0 69 47365.0 70 39132.0 71 30899.0 72 29227.0 73 27555.0 74 23076.0 75 14394.5 76 10192.0 77 7679.0 78 5166.0 79 3929.0 80 2692.0 81 1951.5 82 1211.0 83 863.5 84 516.0 85 383.5 86 251.0 87 161.5 88 72.0 89 72.0 90 72.0 91 55.5 92 39.0 93 30.5 94 22.0 95 14.0 96 6.0 97 4.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2465207.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.216368151958804 #Duplication Level Percentage of deduplicated Percentage of total 1 73.97406946885114 20.872795778316796 2 10.190104843064171 5.750554995179142 3 3.7727915594116306 3.1936342680288403 4 1.9259692044153072 2.1737542448447003 5 1.1521266029010109 1.6254414192560285 6 0.8719594132276649 1.476211669031866 7 0.6651049946151991 1.3136793171438326 8 0.5359778901798393 1.2098679576499594 9 0.47085969926128407 1.1957355560049299 >10 5.815612883086982 36.45837619191914 >50 0.46724658755316806 8.635008794526291 >100 0.14729409488108375 7.095931010818885 >500 0.006529655130893002 1.3299899076900805 >1k 0.003627586183829445 2.1660853363607844 >5k 4.353103420595335E-4 0.8462492735514798 >10k+ 2.902068947063556E-4 4.656684279677348 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 100894 4.092719191532394 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 12842 0.5209298854011043 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 7987 0.32398901998899077 No Hit CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 6669 0.27052494983179914 TruSeq Adapter, Index 22 (95% over 24bp) CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT 6013 0.24391460838785547 Illumina Single End Adapter 2 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG 4586 0.1860290028383012 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 4122 0.16720705401209715 TruSeq Adapter, Index 22 (95% over 24bp) GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3256 0.13207815814250082 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC 3085 0.12514162096732648 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2919 0.11840790651657243 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTT 2832 0.11487879111165918 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2499 0.10137079766526706 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.25275767917258063 0.0 2 0.0 0.0 0.0 0.8215942920817603 0.0 3 0.0 0.0 0.0 1.4209760072886375 0.0 4 0.0 0.0 0.0 1.832057105143706 0.0 5 0.0 0.0 0.0 3.8564712821276266 0.0 6 0.0 0.0 0.0 4.6767269442282124 0.0 7 0.0 0.0 0.0 7.128610295200362 0.0 8 0.0 0.0 0.0 9.893408545408155 0.0 9 0.0 0.0 0.0 12.473110777309978 0.0 10 0.0 0.0 0.0 13.813687856638408 0.0 11 0.0 0.0 0.0 14.906740083084301 0.0 12 0.0 0.0 0.0 15.662782070633419 0.0 13 0.0 0.0 0.0 16.05179605607156 0.0 14 0.0 0.0 0.0 16.319522052306358 0.0 15 0.0 0.0 0.0 16.984942846584484 0.0 16 0.0 0.0 0.0 17.727436276142328 0.0 17 0.0 0.0 0.0 18.6752268673584 0.0 18 0.0 0.0 0.0 19.19510207459252 0.0 19 0.0 0.0 0.0 19.78446434721303 0.0 20 0.0 0.0 0.0 20.484608391911916 0.0 21 0.0 0.0 0.0 21.206981807207264 0.0 22 0.0 0.0 0.0 21.843520645527942 0.0 23 0.0 0.0 0.0 22.416697664739715 0.0 24 0.0 0.0 0.0 22.880593800033832 0.0 25 0.0 0.0 0.0 23.352156634311033 0.0 26 0.0 0.0 0.0 23.796703481695452 0.0 27 0.0 0.0 0.0 24.26214106969516 0.0 28 0.0 0.0 0.0 24.723887284110422 0.0 29 0.0 0.0 0.0 25.224413203434843 0.0 30 0.0 0.0 0.0 25.677113524340957 0.0 31 0.0 0.0 0.0 26.149974424054452 0.0 32 0.0 0.0 0.0 26.640521465337393 0.0 33 0.0 0.0 0.0 27.094763238949103 0.0 34 0.0 0.0 0.0 27.61046029806016 0.0 35 0.0 0.0 0.0 28.06348513532535 0.0 36 0.0 0.0 0.0 28.567053395516076 0.0 37 0.0 0.0 0.0 29.130981698494285 0.0 38 0.0 0.0 0.0 29.77721546304225 0.0 39 0.0 0.0 0.0 30.423124711231146 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGATAA 20 7.034859E-4 45.000004 12 ACTACCG 20 7.034859E-4 45.000004 25 CGTTTTT 27165 0.0 44.28769 1 CGAAACG 60 3.6379788E-12 41.250004 13 ATTACGG 160 0.0 40.781254 1 TATACGG 210 0.0 40.714283 1 CACGACG 360 0.0 40.625 25 CACTTAC 3150 0.0 40.214287 36 ACTTACT 3135 0.0 40.047848 37 ATTGCGG 360 0.0 40.0 1 ACCCGCA 3215 0.0 39.891136 31 GCACTTA 3205 0.0 39.594383 35 GCGTAGG 330 0.0 39.545452 1 CCCGCAC 3260 0.0 39.478527 32 CGCACTT 3235 0.0 39.43586 34 GCGATCG 80 0.0 39.375004 8 CCGCACT 3235 0.0 39.296757 33 GTTTTTT 31420 0.0 39.185234 2 TACGGGA 385 0.0 39.15584 3 AGGGCGA 1270 0.0 39.15354 5 >>END_MODULE