##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043200_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2468002 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.32223150548501 33.0 31.0 34.0 31.0 34.0 2 32.652882372056425 34.0 31.0 34.0 31.0 34.0 3 32.76156218674053 34.0 31.0 34.0 31.0 34.0 4 36.21523280775299 37.0 37.0 37.0 35.0 37.0 5 36.144396965642656 37.0 37.0 37.0 35.0 37.0 6 36.32028823315378 37.0 37.0 37.0 35.0 37.0 7 36.2605897402028 37.0 37.0 37.0 35.0 37.0 8 36.24347143965037 37.0 37.0 37.0 35.0 37.0 9 37.841052803036625 39.0 38.0 39.0 35.0 39.0 10 37.632787574726436 39.0 37.0 39.0 35.0 39.0 11 37.184222298037035 39.0 35.0 39.0 34.0 39.0 12 37.16771906991972 39.0 35.0 39.0 34.0 39.0 13 37.14900190518484 39.0 35.0 39.0 34.0 39.0 14 38.42076019387343 40.0 37.0 41.0 34.0 41.0 15 38.4647273381464 40.0 37.0 41.0 34.0 41.0 16 38.3017489450981 40.0 37.0 41.0 33.0 41.0 17 38.25132597137279 40.0 37.0 41.0 33.0 41.0 18 38.07407206315068 39.0 36.0 41.0 34.0 41.0 19 37.84408967253673 39.0 36.0 41.0 34.0 41.0 20 37.54567014127217 39.0 35.0 41.0 34.0 41.0 21 37.46886671890866 39.0 35.0 41.0 34.0 41.0 22 37.42961107811096 39.0 35.0 41.0 34.0 41.0 23 37.448760171183004 39.0 35.0 41.0 34.0 41.0 24 37.36813381836806 39.0 35.0 41.0 34.0 41.0 25 37.2625674533489 39.0 35.0 41.0 33.0 41.0 26 37.16971825792686 39.0 35.0 41.0 33.0 41.0 27 37.204538326954356 39.0 35.0 41.0 33.0 41.0 28 37.18021055088286 39.0 35.0 41.0 33.0 41.0 29 37.064572070849216 39.0 35.0 41.0 33.0 41.0 30 36.98737359207975 39.0 35.0 41.0 33.0 41.0 31 36.84855968512181 39.0 35.0 41.0 33.0 41.0 32 36.5660222317486 38.0 35.0 41.0 32.0 41.0 33 36.146634403051536 38.0 35.0 41.0 30.0 41.0 34 35.79954311220169 38.0 35.0 41.0 29.0 41.0 35 35.67909507366688 38.0 35.0 41.0 29.0 41.0 36 35.61613564332606 38.0 35.0 41.0 29.0 41.0 37 35.54003319284182 38.0 35.0 41.0 29.0 41.0 38 35.42791740039109 38.0 35.0 41.0 29.0 41.0 39 35.45091778693858 38.0 35.0 41.0 29.0 41.0 40 35.44501989868728 38.0 35.0 41.0 29.0 41.0 41 35.422155654655064 37.0 35.0 41.0 29.0 41.0 42 35.344763496950165 37.0 35.0 41.0 28.0 41.0 43 35.24141471522309 37.0 35.0 40.0 28.0 41.0 44 35.02294609161581 37.0 35.0 40.0 26.0 41.0 45 34.93781366465667 37.0 35.0 40.0 25.0 41.0 46 34.90140810258663 36.0 35.0 40.0 25.0 41.0 47 34.84448513412874 36.0 35.0 40.0 25.0 41.0 48 34.74552573296132 36.0 35.0 40.0 25.0 41.0 49 34.69247796395627 36.0 35.0 40.0 26.0 41.0 50 34.59763120127131 35.0 35.0 40.0 26.0 41.0 51 34.48403972119958 35.0 35.0 40.0 24.0 41.0 52 34.11331554836666 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 4.0 12 4.0 13 2.0 14 20.0 15 45.0 16 119.0 17 249.0 18 566.0 19 1166.0 20 1911.0 21 3283.0 22 5095.0 23 8214.0 24 14348.0 25 25417.0 26 36896.0 27 44021.0 28 44664.0 29 45464.0 30 47727.0 31 53168.0 32 62655.0 33 80927.0 34 198071.0 35 257283.0 36 233975.0 37 220248.0 38 324521.0 39 756361.0 40 1576.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.464523124373482 16.892571399861104 23.199535494703813 31.443369981061604 2 36.35924930368776 18.72757801654942 23.85942150776215 21.05375117200067 3 25.238836921525998 20.429318938963583 35.061073694429744 19.270770445080675 4 22.812987995957865 22.685556980910064 33.44199072772226 21.05946429540981 5 20.99090681450015 30.161928555973617 30.513103311909795 18.334061317616438 6 76.0464942897129 1.8763355945416578 19.03114341074278 3.04602670500267 7 75.96873908530057 1.7802254617297717 17.31915128107676 4.931884171892891 8 66.7818340503776 3.033911641886838 22.85419541799399 7.330058889741581 9 42.36236437409694 13.702136384006172 26.7598243437404 17.175674898156483 10 30.929918209142453 14.90476912093264 35.76281542721602 18.40249724270888 11 27.901395541818847 11.903880142722736 39.15645125084988 21.038273064608536 12 22.592242631894138 12.9996653163166 41.92034690409489 22.48774514769437 13 16.856793470993946 15.742936999240682 44.58225722669592 22.818012303069445 14 18.24779720599902 16.009306313366032 44.48351338451103 21.25938309612391 15 22.904479007715555 13.922841229464158 42.756894038173385 20.415785724646902 16 20.873564932281255 17.990098873501722 40.61159593873911 20.524740255477912 17 21.246943884162167 18.940341215282647 40.22164487711112 19.591070023444065 18 21.350712033458645 26.366226607595944 35.28534417719273 16.997717181752687 19 22.247226704030222 22.776764362427585 33.71930006539703 21.256708868145164 20 21.62721099901864 26.571980087536396 33.797379418655254 18.003429494789714 21 18.486978535673796 21.102008831435306 36.590732098272206 23.82028053461869 22 20.625023804680872 21.368661775800827 34.757467781630645 23.248846637887652 23 22.61635120230859 19.155616567571663 36.389435664962996 21.838596565156752 24 23.96890278046776 17.557076533973635 33.898797488818886 24.575223196739714 25 17.595082986156413 18.496621963839576 37.97079580972787 25.93749924027614 26 17.24577208608421 17.91287041096401 37.48023705005102 27.361120452900767 27 20.988151549309926 21.264326366024015 35.27270237220229 22.474819712463766 28 23.57623697225529 22.26059784392395 31.343775248156202 22.819389935664557 29 23.435475335919502 21.07247076785189 33.89981045396235 21.592243442266255 30 26.43397371639083 18.546743479138186 31.31443977760148 23.704843026869508 31 29.233282631051356 19.025875991996767 29.869708371387055 21.871133005564825 32 25.513188400981846 21.661651813896423 28.652853603846353 24.17230618127538 33 23.98746030189603 21.147875893131367 32.34401754941852 22.520646255554087 34 21.85484452605792 23.596779905364745 32.86277725868942 21.68559830988792 35 24.298278526516594 27.012903555183502 28.214077622303385 20.47474029599652 36 25.213715385968083 24.500304294729098 30.282025703382736 20.003954615920083 37 24.130045275490055 24.284623756382693 31.49721920808816 20.088111760039094 38 21.43178976354152 20.58989417350553 32.545313982727734 25.43300208022522 39 22.518944474113066 17.971379277650502 35.88971970038922 23.619956547847206 40 18.461249221029803 18.41886675942726 37.75296778527732 25.366916234265613 41 19.791718159061457 21.7326404111504 32.010630461401576 26.465010968386572 42 19.372512664090223 17.093543684324406 33.89766296785821 29.63628068372716 43 22.633247460901572 18.553591123508003 33.78506176251073 25.0280996530797 44 21.87186234046812 20.12927866346948 34.29312455986665 23.70573443619576 45 22.763636334168286 20.921376887052766 33.10917090018566 23.20581587859329 46 22.162948004093998 19.812139536353698 33.076472385354634 24.94844007419767 47 20.151482859414212 19.24009786053658 35.028577772627415 25.57984150742179 48 22.178142481245963 17.641963012995937 32.83571083005605 27.344183675702045 49 21.48029053461059 16.639897374475385 35.73177817522028 26.14803391569375 50 20.090056653114544 16.344881406092863 37.87330804432087 25.69175389647172 51 18.022837906938488 15.178107635245027 37.91139553371512 28.887658924101355 52 16.075635270960074 16.13997881687292 40.89692796035011 26.887457951816895 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 616.0 1 3613.5 2 6611.0 3 88599.0 4 170587.0 5 96578.5 6 22570.0 7 20094.5 8 17619.0 9 17110.5 10 16602.0 11 16294.0 12 15986.0 13 15364.0 14 13782.0 15 12822.0 16 12017.0 17 11212.0 18 10420.5 19 9629.0 20 9305.0 21 8981.0 22 8667.5 23 8354.0 24 8185.0 25 8016.0 26 8588.0 27 9160.0 28 9812.0 29 10464.0 30 10921.0 31 11378.0 32 14115.0 33 16852.0 34 18659.0 35 20466.0 36 22191.0 37 23916.0 38 25956.5 39 30349.5 40 32702.0 41 40092.5 42 47483.0 43 59668.5 44 71854.0 45 96700.5 46 121547.0 47 159541.0 48 197535.0 49 223570.5 50 249606.0 51 243082.5 52 236559.0 53 209651.5 54 182744.0 55 164834.0 56 146924.0 57 136661.5 58 126399.0 59 124149.0 60 121899.0 61 122168.5 62 122438.0 63 121048.5 64 101227.5 65 82796.0 66 67986.5 67 53177.0 68 42969.5 69 32762.0 70 28769.0 71 24776.0 72 23646.0 73 22516.0 74 18190.5 75 13865.0 76 10918.5 77 7972.0 78 6060.0 79 4148.0 80 3197.0 81 2246.0 82 1704.0 83 1162.0 84 771.5 85 381.0 86 265.5 87 150.0 88 100.5 89 45.5 90 40.0 91 30.5 92 21.0 93 13.5 94 6.0 95 4.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2468002.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.61514611379023 #Duplication Level Percentage of deduplicated Percentage of total 1 74.41518407866609 22.038165495742927 2 10.155748266549134 6.0152793761744885 3 3.8991266119335983 3.4641961298574415 4 1.9625072381311788 2.324797544265031 5 1.1877993674631857 1.758842591064493 6 0.9013929873214338 1.6016931015282077 7 0.697669274567434 1.4463104253791617 8 0.5871254761578382 1.3910245410834432 9 0.4951985278654599 1.3198839082262477 >10 5.181586455602854 31.728640762190768 >50 0.33382574447883573 6.666211819770281 >100 0.17073960497225701 9.062750454952678 >500 0.006735476684717785 1.3595043113002234 >1k 0.004398678651244267 2.628228450897264 >5k 6.872935392569167E-4 1.4881027697802032 >10k+ 2.749174157027667E-4 5.706368317787163 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 126966 5.144485296203164 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13210 0.5352507818064978 No Hit CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 9064 0.36726064241439027 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 8826 0.3576172142486108 No Hit CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT 7552 0.3059965105376738 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 5917 0.23974859015511332 No Hit CGTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT 5196 0.21053467541760504 No Hit GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 4597 0.18626403058020213 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC 4379 0.17743097452919404 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG 3445 0.13958659676937055 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT 3434 0.13914089210624625 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3365 0.136345108310285 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3118 0.12633701269285844 No Hit GGGCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT 3088 0.12512145452070136 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3137355642337405 0.0 2 0.0 0.0 0.0 1.0137755155789987 0.0 3 0.0 0.0 0.0 1.7270245323950304 0.0 4 0.0 0.0 0.0 2.1937988705033464 0.0 5 0.0 0.0 0.0 4.606155100360534 0.0 6 0.0 0.0 0.0 5.685003496755675 0.0 7 0.0 0.0 0.0 8.527383689316297 0.0 8 0.0 0.0 0.0 11.950719650956522 0.0 9 0.0 0.0 0.0 15.307767173608449 0.0 10 0.0 0.0 0.0 17.061533985790934 0.0 11 0.0 0.0 0.0 18.390827884256172 0.0 12 0.0 0.0 0.0 19.307358746062604 0.0 13 0.0 0.0 0.0 19.807196266453595 0.0 14 0.0 0.0 0.0 20.13069681467033 0.0 15 0.0 0.0 0.0 20.82745475895076 0.0 16 0.0 0.0 0.0 21.54905060854894 4.051860573856909E-5 17 0.0 0.0 0.0 22.481707875439323 4.051860573856909E-5 18 0.0 0.0 0.0 23.038717148527432 4.051860573856909E-5 19 0.0 0.0 0.0 23.687744175247833 4.051860573856909E-5 20 0.0 0.0 0.0 24.378951070542083 4.051860573856909E-5 21 0.0 0.0 0.0 25.08154369404887 4.051860573856909E-5 22 8.103721147713819E-5 0.0 0.0 25.74698075609339 4.051860573856909E-5 23 8.103721147713819E-5 0.0 0.0 26.34981657227182 4.051860573856909E-5 24 2.0259302869284548E-4 0.0 0.0 26.863754567459832 4.051860573856909E-5 25 2.0259302869284548E-4 0.0 0.0 27.357149629538387 4.051860573856909E-5 26 2.0259302869284548E-4 0.0 0.0 27.829231904998455 4.051860573856909E-5 27 2.0259302869284548E-4 0.0 0.0 28.32323474616309 4.051860573856909E-5 28 2.0259302869284548E-4 0.0 0.0 28.801678442724114 4.051860573856909E-5 29 2.0259302869284548E-4 0.0 0.0 29.30552730508322 4.051860573856909E-5 30 2.0259302869284548E-4 0.0 0.0 29.77817684102363 4.051860573856909E-5 31 2.0259302869284548E-4 0.0 0.0 30.24454599307456 4.051860573856909E-5 32 2.0259302869284548E-4 0.0 0.0 30.76132029066427 4.051860573856909E-5 33 2.0259302869284548E-4 0.0 0.0 31.273110799748135 4.051860573856909E-5 34 2.0259302869284548E-4 0.0 0.0 31.832713263603512 4.051860573856909E-5 35 2.0259302869284548E-4 0.0 0.0 32.320030534821285 4.051860573856909E-5 36 2.0259302869284548E-4 0.0 0.0 32.8366022393823 4.051860573856909E-5 37 2.0259302869284548E-4 0.0 0.0 33.5666259589741 4.051860573856909E-5 38 2.0259302869284548E-4 0.0 0.0 34.30844059283582 4.051860573856909E-5 39 2.0259302869284548E-4 0.0 0.0 35.13275110798127 4.051860573856909E-5 40 2.0259302869284548E-4 0.0 0.0 35.89223185394501 4.051860573856909E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCATA 25 3.418304E-5 46.0 46 AATACGG 65 0.0 46.0 1 CGTTTTT 31750 0.0 45.384254 1 CGGGTAT 220 0.0 43.909092 5 TCACGAC 335 0.0 42.567165 24 TATACGG 130 0.0 42.46154 1 ACTACGG 125 0.0 42.32 1 TCATCGG 120 0.0 42.166668 1 CGACGGT 350 0.0 42.05714 27 TAGTAGG 520 0.0 42.019234 1 AGGGTAC 635 0.0 42.01575 5 CTTACGG 225 0.0 41.91111 1 CACTTAC 3315 0.0 41.62896 36 TAGGGTA 680 0.0 41.60294 4 TCCGTAC 155 0.0 41.548386 46 ACTTACT 3300 0.0 41.539394 37 CACGACG 350 0.0 41.399998 25 CTTACTG 3295 0.0 41.253418 38 GTTTTTT 35450 0.0 41.23131 2 TACGCGG 335 0.0 41.19403 1 >>END_MODULE