SRR1043199_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043199_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2415014
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	120810	5.002455472307821	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12437	0.5149866626031981	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	8517	0.35266876299681904	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	7371	0.30521562193842355	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	7298	0.30219286513452925	No Hit
CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	5731	0.23730711291942821	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	4927	0.20401538044914025	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	4555	0.1886117430375145	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT	4291	0.17768012939055428	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT	3292	0.13631390956739795	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3271	0.13544434939093522	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCC	3266	0.13523731125368216	No Hit
GGGCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	3075	0.12732845441061624	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2922	0.1209930874106734	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGAT	30	2.1664982E-6	45.000004	25
TCGAACA	20	7.034832E-4	45.0	10
CGTTTTT	30290	0.0	44.435455	1
CACGACG	295	0.0	42.711864	25
TACGCGG	290	0.0	42.672417	1
AATACGG	85	0.0	42.35294	1
TAGGGTA	630	0.0	41.785713	4
CGCACTT	3425	0.0	41.649635	34
CATATGC	980	0.0	41.32653	32
CGGTCTA	305	0.0	41.311478	30
ACTTACT	3430	0.0	40.998543	37
CACTTAC	3475	0.0	40.98561	36
CGACGGT	325	0.0	40.84615	27
TAGCATA	1010	0.0	40.767326	29
GCACTTA	3510	0.0	40.70513	35
AGGGTAA	470	0.0	40.69149	5
ACCCGCA	3585	0.0	40.606697	31
GTTGATC	1125	0.0	40.6	15
CTTACTG	3465	0.0	40.584415	38
CCGCACT	3515	0.0	40.583214	33