##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043198_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 776578 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20246259873445 33.0 31.0 34.0 31.0 34.0 2 32.54964343568837 34.0 31.0 34.0 31.0 34.0 3 32.66297397041894 34.0 31.0 34.0 31.0 34.0 4 36.18290371347115 37.0 35.0 37.0 35.0 37.0 5 36.07399771819444 37.0 35.0 37.0 35.0 37.0 6 36.2701595976193 37.0 36.0 37.0 35.0 37.0 7 36.17612912032018 37.0 37.0 37.0 35.0 37.0 8 36.17745802739712 37.0 37.0 37.0 35.0 37.0 9 37.78730404415268 39.0 38.0 39.0 35.0 39.0 10 37.61171704580866 39.0 37.0 39.0 35.0 39.0 11 37.232460873215565 39.0 37.0 39.0 35.0 39.0 12 37.1925151111672 39.0 37.0 39.0 34.0 39.0 13 37.204296284468526 39.0 37.0 39.0 34.0 39.0 14 38.60057199663137 40.0 38.0 41.0 35.0 41.0 15 38.69905663049945 40.0 38.0 41.0 35.0 41.0 16 38.71856272003585 40.0 38.0 41.0 35.0 41.0 17 38.7135883324019 40.0 38.0 41.0 35.0 41.0 18 38.4555820535735 40.0 37.0 41.0 35.0 41.0 19 38.214836114337515 40.0 37.0 41.0 35.0 41.0 20 37.97056702610684 40.0 35.0 41.0 34.0 41.0 21 37.93533811156124 40.0 35.0 41.0 34.0 41.0 22 37.88635397860872 40.0 35.0 41.0 34.0 41.0 23 37.875645459953795 40.0 35.0 41.0 34.0 41.0 24 37.767730994182166 40.0 35.0 41.0 34.0 41.0 25 37.67978103938046 39.0 35.0 41.0 34.0 41.0 26 37.62608392202715 39.0 35.0 41.0 34.0 41.0 27 37.61994931610218 39.0 35.0 41.0 34.0 41.0 28 37.6374697712271 40.0 35.0 41.0 34.0 41.0 29 37.591999773364684 40.0 35.0 41.0 34.0 41.0 30 37.518084468012226 40.0 35.0 41.0 34.0 41.0 31 37.38454990998972 40.0 35.0 41.0 33.0 41.0 32 37.19743670307426 40.0 35.0 41.0 33.0 41.0 33 36.95711828045605 40.0 35.0 41.0 33.0 41.0 34 36.744239471115584 40.0 35.0 41.0 32.0 41.0 35 36.61960807542835 40.0 35.0 41.0 32.0 41.0 36 36.50504649887068 39.0 35.0 41.0 31.0 41.0 37 36.40885783527218 39.0 35.0 41.0 31.0 41.0 38 36.35406746006196 39.0 35.0 41.0 31.0 41.0 39 36.271412530357544 39.0 35.0 41.0 31.0 41.0 40 36.215424593537286 39.0 35.0 41.0 31.0 41.0 41 36.199373404860815 39.0 35.0 41.0 31.0 41.0 42 36.139051067632614 39.0 35.0 41.0 31.0 41.0 43 36.027868417596174 39.0 35.0 41.0 30.0 41.0 44 35.83958855388641 39.0 35.0 41.0 30.0 41.0 45 35.81049682066708 38.0 35.0 41.0 30.0 41.0 46 35.80950657886265 38.0 35.0 41.0 30.0 41.0 47 35.72834924502111 38.0 35.0 41.0 29.0 41.0 48 35.65790171753513 38.0 35.0 40.0 29.0 41.0 49 35.58915009181305 38.0 35.0 40.0 28.0 41.0 50 35.45032308409458 38.0 35.0 40.0 28.0 41.0 51 35.34878016116861 38.0 35.0 40.0 27.0 41.0 52 35.01879399107366 37.0 35.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 1.0 14 4.0 15 6.0 16 15.0 17 38.0 18 114.0 19 254.0 20 466.0 21 798.0 22 1333.0 23 2284.0 24 4203.0 25 7436.0 26 10607.0 27 11207.0 28 10498.0 29 10187.0 30 11150.0 31 13492.0 32 17180.0 33 22433.0 34 43241.0 35 85795.0 36 72853.0 37 59561.0 38 96893.0 39 293640.0 40 887.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.41463188501348 19.19704137897288 25.222321518250578 28.166005217763058 2 32.627501680449356 20.17942820940073 26.37674515631398 20.81632495383593 3 21.724153916284006 22.262927870735457 36.96486379990162 19.04805441307892 4 23.644630674574866 24.240320998019516 33.95898415870653 18.15606416869909 5 20.166422432775587 30.634398605162648 29.476755715459362 19.722423246602403 6 74.19589532538909 1.5852882775458483 20.174148636711315 4.044667760353757 7 74.3491317034477 1.2289815060431792 16.7310946228196 7.690792167689531 8 62.21487088225523 3.1152054268856446 25.171586112405965 9.498337578453162 9 35.020049499213215 19.553090610344356 27.40046717779798 18.026392712644448 10 28.1505528098916 18.101851971083395 41.52216519139095 12.225430027634056 11 24.920999564757178 16.62112498680107 37.99296400361587 20.46491144482589 12 17.16453466361396 21.881124626244887 42.393809765406694 18.560530944734463 13 12.579676478087197 25.632196637040966 40.77104939877256 21.01707748609927 14 10.690490845736036 22.55266051832527 46.14925995843303 20.607588677505674 15 11.241240416287868 18.37072386804674 48.21099747868212 22.17703823698328 16 11.918442191254453 24.21006003260458 38.51126351763764 25.360234258503333 17 14.505304039001876 21.699687603820866 41.96951239926962 21.82549595790764 18 15.958345459181178 28.815521428626617 37.90733190999487 17.31880120219733 19 16.631812902245493 23.313949146125694 34.821357287999405 25.23288066362941 20 13.084068825024659 30.971389866825998 34.333705049589355 21.61083625855999 21 14.036709770299957 24.32672571203408 35.17727774930528 26.45928676836068 22 11.460020757734574 27.786004754190824 31.12372485442544 29.630249633649164 23 11.495303755707734 22.624385444861947 43.888057606576545 21.992253192853774 24 16.458230853822798 22.11213812392316 38.81400194185259 22.615629080401455 25 12.738449968966414 27.09141902036885 37.59055754863002 22.579573462034723 26 15.347975348258641 23.92856866921288 35.75506903363216 24.968386948896313 27 18.837386585764726 24.2465019611681 39.47433483822616 17.441776614841007 28 14.294764981753282 23.322834280651783 35.541954575071664 26.840446162523275 29 16.923863411016022 28.713277996543813 32.58848435057393 21.77437424186624 30 21.158853328319886 23.597114520370134 32.999132089757886 22.24490006155209 31 19.778180685005243 25.899008212954783 33.27714666137851 21.045664440661465 32 15.79390608541576 31.196093631290093 32.34562400686087 20.664376276433273 33 17.53461983213534 24.201046128012898 38.03262518381927 20.23170885603249 34 14.327601348480126 28.448397971613925 38.282567881140075 18.941432798765867 35 20.528137547033268 25.34774356214057 33.220874142713285 20.903244748112876 36 23.481994081727787 28.815392658561017 29.766874673245958 17.935738586465234 37 19.433076909209376 26.812374288223463 33.570742410936184 20.183806391630977 38 19.873599303611485 25.896175271511684 28.990391177705266 25.239834247171565 39 25.672244127441157 22.34353793179822 30.834764827229204 21.149453113531415 40 18.503872115872454 20.01846562740639 36.50541220585698 24.972250050864176 41 20.430658607377495 23.24531470116331 31.485568738748714 24.83845795271048 42 20.148652163723412 19.08037569954338 37.738514353999214 23.032457782733996 43 23.619906821980535 23.28768005274422 33.7835993293655 19.30881379590975 44 16.196183770336013 27.361836158119342 34.32713777624398 22.114842295300665 45 19.90540550981357 23.177710416725684 33.519363154763596 23.397520918697158 46 23.462163491626082 21.2806698103732 32.15015104728695 23.107015650713773 47 18.7614122470634 17.88152638884954 36.648475748733546 26.708585615353513 48 20.263128752037787 16.98361272145232 32.0319401270703 30.72131839943959 49 20.93814143588925 17.964583081158622 37.3292830855368 23.767992397415327 50 19.44814300688405 17.255832640121145 37.16677526275532 26.129249090239487 51 16.561504446430362 16.28722420671201 37.544972945409214 29.606298401448406 52 15.693851744448079 16.459776094609943 44.12834254897769 23.718029611964283 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 144.0 1 895.0 2 1646.0 3 23809.5 4 45973.0 5 25253.5 6 4534.0 7 4441.0 8 4348.0 9 4660.0 10 4972.0 11 5171.5 12 5371.0 13 5335.0 14 5023.0 15 4747.0 16 4460.0 17 4173.0 18 3984.5 19 3796.0 20 3593.5 21 3391.0 22 3177.0 23 2963.0 24 2908.0 25 2853.0 26 3141.5 27 3430.0 28 3744.0 29 4058.0 30 3978.5 31 3899.0 32 4762.5 33 5626.0 34 7221.0 35 8816.0 36 10436.0 37 12056.0 38 13129.5 39 17381.5 40 20560.0 41 29665.5 42 38771.0 43 58344.5 44 77918.0 45 98918.5 46 119919.0 47 122038.0 48 124157.0 49 107077.0 50 89997.0 51 71428.5 52 52860.0 53 41585.5 54 30311.0 55 24676.0 56 19041.0 57 17097.0 58 15153.0 59 13981.5 60 12810.0 61 10715.0 62 8620.0 63 7128.0 64 4750.5 65 3865.0 66 3338.0 67 2811.0 68 2381.5 69 1952.0 70 1692.0 71 1432.0 72 1405.0 73 1378.0 74 1301.5 75 1225.0 76 1111.5 77 998.0 78 711.5 79 425.0 80 308.5 81 192.0 82 177.0 83 162.0 84 98.5 85 35.0 86 25.0 87 15.0 88 12.5 89 15.0 90 20.0 91 11.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 776578.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.430710315666254 #Duplication Level Percentage of deduplicated Percentage of total 1 73.3764989064359 22.328989821995524 2 11.804099272697313 7.184142510096373 3 4.6629357158634654 4.256893379700449 4 2.411025241216571 2.9347684271688332 5 1.3243262900957764 2.015009484866278 6 0.9314653287500073 1.7007090952966981 7 0.6374197584628947 1.357799521348641 8 0.44453122223610625 1.0821920680108805 9 0.33894976541168215 0.9283033910525339 >10 3.2250653109371212 21.857294378187582 >50 0.6114261654092229 12.698556234087462 >100 0.21866977436789817 11.169235505892622 >500 0.008492030072539734 1.7345050198524181 >1k 0.004246015036269867 2.651244673893904 >5k 4.2460150362698667E-4 0.6534111952766447 >10k+ 4.2460150362698667E-4 5.446945293273133 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 42156 5.428430885242693 No Hit CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT 5057 0.651190221716299 No Hit CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCTT 4711 0.6066357790202658 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT 4025 0.5182995140217724 No Hit CGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC 2197 0.2829078341132507 No Hit TCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT 1677 0.21594740000360554 No Hit CGGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG 1444 0.18594397471986074 No Hit GCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC 1409 0.1814370224240192 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCG 1396 0.17976301157127808 No Hit ACCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC 1359 0.17499851914424563 No Hit AGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC 1172 0.1509185168778925 No Hit CGTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT 1129 0.14538140405728722 No Hit TCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC 900 0.11589305903592427 No Hit ACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT 879 0.11318888765841936 No Hit TGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC 843 0.1085531652969824 No Hit CGTTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC 832 0.1071366945754322 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTT 817 0.10520514359150014 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6338062628609104 0.0 2 0.0 0.0 0.0 2.1866444838767003 0.0 3 0.0 0.0 0.0 3.6730373510452266 0.0 4 0.0 0.0 0.0 4.751357880341704 0.0 5 0.0 0.0 0.0 9.840608412805926 0.0 6 0.0 0.0 0.0 11.33215208259827 0.0 7 0.0 0.0 0.0 16.211764948273064 0.0 8 0.0 0.0 0.0 21.723123755759243 0.0 9 0.0 0.0 0.0 26.296392635382407 0.0 10 0.0 0.0 0.0 28.636788577580102 0.0 11 0.0 0.0 0.0 30.59113186312257 0.0 12 0.0 0.0 0.0 32.03541691884138 0.0 13 0.0 0.0 0.0 32.634068953794724 0.0 14 0.0 0.0 0.0 33.05231412684881 0.0 15 0.0 0.0 0.0 34.43672110206573 0.0 16 0.0 0.0 0.0 36.00514050101857 0.0 17 0.0 0.0 0.0 37.88801640015556 0.0 18 0.0 0.0 0.0 38.82417477703463 0.0 19 0.0 0.0 0.0 39.81853722356286 0.0 20 0.0 0.0 0.0 40.87406545124894 0.0 21 0.0 0.0 0.0 41.897272392470555 0.0 22 7.726203935728285E-4 0.0 0.0 42.898459652475346 0.0 23 7.726203935728285E-4 0.0 0.0 43.70777951474288 0.0 24 0.001545240787145657 0.0 0.0 44.37017273216599 0.0 25 0.001545240787145657 0.0 0.0 44.96019717272444 0.0 26 0.001545240787145657 0.0 0.0 45.56387124023601 0.0 27 0.001545240787145657 0.0 0.0 46.15299429033529 0.0 28 0.001545240787145657 0.0 0.0 46.7583423686996 0.0 29 0.001545240787145657 0.0 0.0 47.510745861973945 0.0 30 0.001545240787145657 0.0 0.0 48.133992979456025 0.0 31 0.001545240787145657 0.0 0.0 48.67302447403867 0.0 32 0.001545240787145657 0.0 0.0 49.19879265186498 0.0 33 0.001545240787145657 0.0 0.0 49.72790885139677 0.0 34 0.001545240787145657 0.0 0.0 50.3328706195643 0.0 35 0.001545240787145657 0.0 0.0 50.82657505105733 0.0 36 0.001545240787145657 0.0 0.0 51.28911712667627 0.0 37 0.001545240787145657 0.0 0.0 51.79505471440087 0.0 38 0.001545240787145657 0.0 0.0 52.261202351856475 0.0 39 0.001545240787145657 0.0 0.0 52.736492663969365 0.0 40 0.0019315509839320712 0.0 0.0 53.241915171431586 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTGCGG 105 0.0 46.000004 1 ACATTGG 35 1.01899786E-7 46.000004 1 GCAAACG 35 1.01899786E-7 46.000004 9 ATTCGTT 35 1.01899786E-7 46.000004 11 CTTGATG 35 1.01899786E-7 46.000004 22 ATCGCGG 70 0.0 46.000004 1 ACGAAGG 70 0.0 46.000004 1 GCATAAT 20 6.310183E-4 46.0 9 TCACGAC 45 3.092282E-10 46.0 24 TCGCCGT 20 6.310183E-4 46.0 24 CTAGACA 25 3.4161247E-5 46.0 40 CTATGAC 20 6.310183E-4 46.0 30 ACTATCC 30 1.860617E-6 46.0 16 CTGTCGG 30 1.860617E-6 46.0 1 GTACCGG 60 0.0 46.0 1 CGAACCT 20 6.310183E-4 46.0 34 GTCGATG 25 3.4161247E-5 46.0 40 AATCAGG 30 1.860617E-6 46.0 1 TACTTGG 55 1.8189894E-12 46.0 1 CAACGGC 20 6.310183E-4 46.0 2 >>END_MODULE