SRR1043197_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043197_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	769391
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39654	5.153946432958015	No Hit
CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	5085	0.6609123319612524	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	4780	0.6212705893362412	No Hit
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	3987	0.5182020585112121	No Hit
CGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	2261	0.29386878713164044	No Hit
TCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	1695	0.22030411065375083	No Hit
CGGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT	1491	0.1937896336193171	No Hit
GCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	1462	0.19002041874677505	No Hit
ACCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	1409	0.18313185363488785	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCC	1369	0.1779329365693126	No Hit
AGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	1210	0.15726724123365102	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC	1074	0.13959092321069522	No Hit
ACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	928	0.12061487592134558	No Hit
TGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	897	0.11658571519552478	No Hit
TCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	873	0.11346636495617962	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTT	827	0.1074876103307681	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCT	803	0.10436826009142296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAACTT	35	1.2112287E-7	45.000004	8
GCAAACG	35	1.2112287E-7	45.000004	9
AGGGTCG	35	1.2112287E-7	45.000004	5
GCTTAGG	155	0.0	45.000004	1
GGTATTC	35	1.2112287E-7	45.000004	7
TGCTCGC	35	1.2112287E-7	45.000004	10
AGTTAGG	125	0.0	45.000004	1
TCGCCGC	25	3.8895985E-5	45.0	28
CATGGAT	20	7.031832E-4	45.0	29
AAGTAAC	20	7.031832E-4	45.0	24
ATCTCGT	20	7.031832E-4	45.0	40
AAATCCG	20	7.031832E-4	45.0	18
AGATCGT	25	3.8895985E-5	45.0	42
ACTGCGA	20	7.031832E-4	45.0	16
ATAGGTG	45	3.8380676E-10	45.0	23
CATGCGG	100	0.0	45.0	1
TTAGCGC	25	3.8895985E-5	45.0	1
TTTCGTG	20	7.031832E-4	45.0	21
TCGGGTA	25	3.8895985E-5	45.0	4
GCAGTAC	20	7.031832E-4	45.0	37