Basic Statistics
Measure | Value |
---|---|
Filename | SRR805428_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8864298 |
Sequences flagged as poor quality | 0 |
Sequence length | 53 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGAACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30295 | 0.34176423220428737 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 78320 | 0.0 | 44.098503 | 1 |
TCAACGC | 79670 | 0.0 | 43.42795 | 12 |
CAACGCA | 79715 | 0.0 | 43.41228 | 13 |
ATCAACG | 80030 | 0.0 | 43.256092 | 11 |
GTGGTAT | 79435 | 0.0 | 43.160007 | 6 |
AACGCAG | 80305 | 0.0 | 43.084553 | 14 |
GTATCAA | 79995 | 0.0 | 43.037064 | 9 |
AGTGGTA | 79715 | 0.0 | 43.034935 | 5 |
ACGCAGA | 80385 | 0.0 | 43.02998 | 15 |
GGTATCA | 80085 | 0.0 | 42.944683 | 8 |
TATCAAC | 80385 | 0.0 | 42.86627 | 10 |
TGGTATC | 80025 | 0.0 | 42.862354 | 7 |
CGCAGAG | 80920 | 0.0 | 42.754204 | 16 |
AGAGTAC | 69120 | 0.0 | 42.59715 | 19 |
GAGTACT | 32815 | 0.0 | 42.538475 | 20 |
AGCAGTG | 81735 | 0.0 | 42.281887 | 2 |
GCAGTGG | 81960 | 0.0 | 42.140007 | 3 |
GTACTTT | 32795 | 0.0 | 42.098644 | 22 |
CAGTGGT | 81680 | 0.0 | 42.051422 | 4 |
CAGAGTA | 71325 | 0.0 | 41.48454 | 18 |