FastQCFastQC Report
Thu 26 May 2016
SRR805345_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR805345_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139702936
Sequences flagged as poor quality0
Sequence length59
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGATA293050.042.5103231
ACGGTAA348700.041.89692
GCCGATA188150.041.408451
CGGTAAG241350.040.5048683
GCCGATT217500.039.548961
GCGGATC348500.039.3279721
GCGGATT361100.038.638191
ACGGTAG230450.036.648082
GACGGTA405550.035.925781
GCCGATC238250.035.5928651
ACGGTTA257350.033.970662
CACGGTA231200.032.3914341
TATGGTA587450.032.1816331
GATACTA499050.030.9047181
CGGATAG157500.030.742
AACGGTT165200.030.5904941
AACGGTA173300.030.4910531
GACGGTT459200.029.8067281
CCGATTG136550.028.5668242
ACGGTTG378000.028.3227522
Produced by FastQC (version 0.11.5)