FastQCFastQC Report
Thu 26 May 2016
SRR805343_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR805343_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104517449
Sequences flagged as poor quality0
Sequence length59
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGATCG3252500.046.1267054
TGAGATC3268950.045.035293
CTGAGAT3276350.044.9934272
GCTGAGA3257300.044.085041
CTCGTAT3727950.041.12246717
AGATCGG3730650.041.067135
GATCGGA3727200.041.049696
GCTCGTA3734300.041.0319616
TATGCCG3739750.040.9516221
ATGCCGT3729750.040.75589822
TCGTATG3771300.040.6743718
TGCCGTC3741600.040.52695523
GCCGTCT3748000.040.4513924
CGTATGC3797800.040.39195319
GAGCTCG3834650.040.08810814
AGCTCGT3840800.039.92939415
CCGTCTT3783850.039.7354725
GTATGCC3862350.039.69082320
ATCGGAA3903400.039.2258957
CGTCTTC3868600.038.6156426
Produced by FastQC (version 0.11.5)