FastQCFastQC Report
Thu 26 May 2016
SRR805341_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR805341_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105705756
Sequences flagged as poor quality0
Sequence length59
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTTA241700.035.589161
CCGAGTA193050.035.5392381
CGCTTAG127000.034.0535432
GAGATCG377150.034.0217443
CGAGTAA145900.032.530162
CGGGGTA86100.030.6242771
CTCGTAT460050.029.69981616
ACGCTTA93050.029.5900041
CGAACTA83550.029.465591
AGATCGG458750.029.1312274
TCGCTTC233650.028.6265771
GATCGGA475550.028.5534635
TATGCCG482500.028.40580420
GAGCTTA508250.028.1762921
GCTCGTA495500.027.72472415
ATGCCGT494900.027.72085421
TCGTATG498200.027.5106417
CGTATGC508700.026.9896818
CGCTTCG105950.026.6875882
TGCCGTC514150.026.66235722
Produced by FastQC (version 0.11.5)