Basic Statistics
Measure | Value |
---|---|
Filename | SRR805334_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23291281 |
Sequences flagged as poor quality | 0 |
Sequence length | 53 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 48499 | 0.2082281348114773 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGAGTAC | 33645 | 0.0 | 33.26111 | 19 |
ACATGGG | 24790 | 0.0 | 28.960268 | 24 |
GTACATG | 25580 | 0.0 | 28.708954 | 22 |
GAGTACA | 26220 | 0.0 | 28.528034 | 20 |
CAACGCA | 42985 | 0.0 | 27.296848 | 13 |
TCAACGC | 43080 | 0.0 | 27.247564 | 12 |
AGTACAT | 27375 | 0.0 | 26.998173 | 21 |
CATGGGG | 18100 | 0.0 | 26.992544 | 25 |
TACATGG | 27070 | 0.0 | 26.946436 | 23 |
AACGCAG | 43770 | 0.0 | 26.775076 | 14 |
GAGTACT | 14470 | 0.0 | 25.968555 | 20 |
ATCAACG | 46000 | 0.0 | 25.492393 | 11 |
GTATCAA | 46020 | 0.0 | 25.363865 | 9 |
ACGCAGA | 46480 | 0.0 | 25.239244 | 15 |
TATCAAC | 47790 | 0.0 | 24.48347 | 10 |
GGTATCA | 48210 | 0.0 | 24.226303 | 8 |
TGGTATC | 48205 | 0.0 | 24.199564 | 7 |
CGCAGAG | 48690 | 0.0 | 24.132267 | 16 |
AGTGGTA | 48440 | 0.0 | 24.014244 | 5 |
GTGGTAT | 49025 | 0.0 | 23.785212 | 6 |