Basic Statistics
Measure | Value |
---|---|
Filename | SRR805325_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20326197 |
Sequences flagged as poor quality | 0 |
Sequence length | 53 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 477647 | 2.3499083473411186 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTG | 23051 | 0.11340537533902678 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCTGGTGAGATGGCTCAGTGG | 21830 | 0.10739834903695955 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 159175 | 0.0 | 43.710663 | 1 |
TCAACGC | 159240 | 0.0 | 43.678062 | 12 |
CAACGCA | 159355 | 0.0 | 43.59493 | 13 |
GTATCAA | 159315 | 0.0 | 43.431816 | 9 |
AGTGGTA | 158385 | 0.0 | 43.416798 | 5 |
GTGGTAT | 158655 | 0.0 | 43.408085 | 6 |
GGTATCA | 158730 | 0.0 | 43.357964 | 8 |
ACGCAGA | 160430 | 0.0 | 43.280834 | 15 |
ATCAACG | 160860 | 0.0 | 43.241108 | 11 |
AACGCAG | 160635 | 0.0 | 43.229992 | 14 |
TGGTATC | 159430 | 0.0 | 43.15433 | 7 |
CGCAGAG | 161525 | 0.0 | 42.943783 | 16 |
TATCAAC | 161530 | 0.0 | 42.815884 | 10 |
CAGTGGT | 161490 | 0.0 | 42.6475 | 4 |
AGAGTAC | 158295 | 0.0 | 42.635365 | 19 |
GCAGTGG | 162540 | 0.0 | 42.62646 | 3 |
AGCAGTG | 164115 | 0.0 | 42.237423 | 2 |
CAGAGTA | 160470 | 0.0 | 42.183426 | 18 |
GCAGAGT | 162170 | 0.0 | 41.89628 | 17 |
GAGTACT | 79940 | 0.0 | 41.72617 | 20 |