SRR805291_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR805291_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35658795
Sequences flagged as poor quality	0
Sequence length	53
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTC	190531	0.5343169896795447	Illumina Paired End PCR Primer 2 (100% over 53bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAA	130771	0.36672860089635667	Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTG	49041	0.13752848350596256	Illumina Paired End PCR Primer 2 (100% over 53bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	28760	33.011124	42
CTCGTAT	29100	32.536594	38
ACCGATC	29395	32.242046	32
CGTATGC	29685	31.95873	40
TCGTATG	29780	31.912022	39
ATGCCGT	29815	31.677507	43
TCTCGTA	30070	31.48703	37
GACCGAT	30255	31.473143	31
CCGATCT	30225	31.185608	33
CGATCTC	30685	30.77937	34
GCCGTCT	30775	30.712263	45
AGACCGA	31345	30.446163	30
ATCTCGT	31160	30.415756	36
GATCTCG	31195	30.389162	35
TGCCGTC	31145	30.332315	44
GAGACCG	31775	30.063728	29
CGAGACC	31910	29.980724	28
GTATGCC	32010	29.776943	41
CCGTCTT	33000	28.74121	46
CCGAGAC	33515	28.678204	27