FastQCFastQC Report
Thu 26 May 2016
SRR805235_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR805235_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18128587
Sequences flagged as poor quality0
Sequence length53
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT174950.026.11261
AGCAGTG291200.015.7123962
GCAGTGG318700.014.4450883
AGTGGTA321150.014.2031765
TCAACGC326000.013.91978412
CAACGCA326700.013.8683813
GGTATCA334300.013.6163628
ATCAACG335150.013.58182811
GTGGTAT336950.013.5580936
GTATCAA338450.013.4702319
AACGCAG337550.013.43652714
TGGTATC343100.013.2808217
ACGCAGA343550.013.20186215
TATCAAC346800.013.12557610
CGCAGAG345350.013.09902916
CAGTGGT357400.012.9335474
AGAGTAC347650.012.762259519
CAGAGTA365050.012.26338818
GAGTACT94200.011.97452220
GCAGAGT388700.011.63210617
Produced by FastQC (version 0.11.5)